View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_21 (Length: 348)
Name: NF2504_high_21
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_21 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 4021964 - 4021644
Alignment:
| Q |
14 |
aacctgtgtgagactccaatacaacttaaataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgatccccaagcc |
113 |
Q |
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| T |
4021964 |
aacctgtgtgagactccaatacaacttaaataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgattcccaagcc |
4021865 |
T |
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| Q |
114 |
atagatctctccaaaacaatgtgttttcacttttcaccatttccgactactcacataacttaatttgtaaaccagtttggttcgacttcacatgcctttc |
213 |
Q |
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| T |
4021864 |
atagatctctccaaaacaatgtgttttcacttttcaccgtttccaactactcacttaacttaatttgtaaaccagtttggttcgacttcacatgcctttc |
4021765 |
T |
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| Q |
214 |
caatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggacggagcaattttcctgaaactggactgtacctatactt |
313 |
Q |
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| T |
4021764 |
caatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggatggagcaattttcctgaaactggactgtacctatactt |
4021665 |
T |
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| Q |
314 |
tattaacccgaaccaaatagt |
334 |
Q |
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| T |
4021664 |
tattaacctgaaccaaatagt |
4021644 |
T |
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Back To:
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Target: scaffold0376 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
| Q |
182 |
aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga |
259 |
Q |
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| T |
5190 |
aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga |
5113 |
T |
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