View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_25 (Length: 329)
Name: NF2504_high_25
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 31431477 - 31431776
Alignment:
| Q |
1 |
aagtggttggggattaagccaagagacgtaatgttggcatttggtattaattagtggcggttgtcctctaatttggaagaaaagnnnnnnnngttttaga |
100 |
Q |
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| T |
31431477 |
aagtggttggggattaagccaagagacgtaatgttggtatttggtatta----gtggcggttgtcctctaatttggaaaaaaa-------aagttttaga |
31431565 |
T |
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| Q |
101 |
aaatatcgggtttttggttttccaactcaaccacagaactttactatagctagttgcaataatgtgactcatatatgataacgtcaaccacttcttgttt |
200 |
Q |
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| T |
31431566 |
aaatatcgggtttttgtttttccaactcaacca--gaactttactatagctagttgcaataatgtgactcatatatgataacgtcaaccacttctcgttt |
31431663 |
T |
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| Q |
201 |
gatgtaattttattatttggtggaggttacaaatcattcaagatatattgaaaacatttctcactttcaaatattgacatataatcactgttatgatcag |
300 |
Q |
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| T |
31431664 |
gatgtaattttattatttggtggaggttacaaatcattcaagatatattgaaaacattcctcactttcaaatattgacatataatcactgttatgatcag |
31431763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 122 - 308
Target Start/End: Complemental strand, 31446748 - 31446565
Alignment:
| Q |
122 |
ccaactcaaccacagaactttactatagctagttgcaataatgtgactcatatatgataacgtcaaccacttcttgtttgatgtaattttattatttggt |
221 |
Q |
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| T |
31446748 |
ccaactcaaccaca--actttattgtaacaaattgcaataatgtgacccatatatagtaacgtcaaccacttctcttttggtgcaaatttattatttggt |
31446651 |
T |
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| Q |
222 |
ggaggttacaaatcattcaagatatattgaaaacatttctcactttcaaatattgacatataatcactgttatgatcagttaacttt |
308 |
Q |
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| T |
31446650 |
ggagggtacaaatcatt-aagatatattgaaaacattcctcacttccaaataatggcatataatcacttttatgactagttaacttt |
31446565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 14337559 - 14337708
Alignment:
| Q |
147 |
tagctagttgcaataatgtgactcatatatgataacgtcaaccacttcttgtttgatgtaattttattatttggtggaggttacaaatcattcaagatat |
246 |
Q |
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|||| ||||||||||||||||| ||||| | ||||||||||||||| | |||| || || | |||||||| ||||| | ||||| |||| ||||||| |
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| T |
14337559 |
tagcaagttgcaataatgtgacccatatccgttaacgtcaaccacttatattttggtgcaaatgtattattttgtggatgatacaagccattgaagatat |
14337658 |
T |
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| Q |
247 |
attg-aaaacatttctcactttcaaatattgacatataatcactgttatg |
295 |
Q |
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| T |
14337659 |
attgaaaaacgtttcttactgccaaatattgacatataatcactcttatg |
14337708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 11343719 - 11343646
Alignment:
| Q |
232 |
aatcattcaagatatattgaaaacatttctcactttcaaatattgacatataatcactgttatgatcagttaact |
306 |
Q |
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| T |
11343719 |
aatcattcaagatatattgaaaatgtttctcac-ttccaatactggcatataatcactctcacgattagttaact |
11343646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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