View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_3 (Length: 613)
Name: NF2504_high_3
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 48960385 - 48960666
Alignment:
| Q |
12 |
gagatgaacttcgtctgctaactatgttttcacatgtctctaatgcaaacattttgttctctgatactggtacacgtcgctcgccactttcaaaacaatt |
111 |
Q |
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| T |
48960385 |
gagatgaacttcgtctgctaactatgttttcacatgtctctaatgcaaacattttgttctctgatactggtacacgtcgctcgccactttcaaaacaatt |
48960484 |
T |
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| Q |
112 |
cgagaattgcagtttctatttctttccttcttgcatgcatataagtgtgaaggtcaaacattttgtgcagataatctttcatctcatgcatgatactcta |
211 |
Q |
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| T |
48960485 |
cgaggattgcagtttctatttctttccttcttgcatgcatataagtgtgaaggtcaaacattttgtgcggataatctttcatctcatgcatgatactcta |
48960584 |
T |
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| Q |
212 |
acatgttcataacgtttagcagtaatcatgaatgagtaagttgtatattaaatatatgatttgcaaatttatttgttgcatg |
293 |
Q |
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| T |
48960585 |
acatgttcataacgtttagcagtaataatgaatgagtaagttgtatattaaatatatgatttgcaaatttatttgttgcatg |
48960666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 378 - 596
Target Start/End: Original strand, 48960751 - 48960969
Alignment:
| Q |
378 |
atcaacataaaaacacgatgaaaattgacaataatatgcatgatctgaaacaaacttaataattttactgactaaatttcaaagtagttgagaaaaacaa |
477 |
Q |
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| T |
48960751 |
atcaacataataacacgatgaaaattgacaataatatgcatgatctgaaacaaacttaataattttactgactaaatttcaaagtagttgagaaaaacaa |
48960850 |
T |
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| Q |
478 |
atctgaaattcatagtaaatttgtcagagtagcaatgtagttactcttcagtaatcttcattgatttgagagtctttgggaaaatgttgcacaatcacga |
577 |
Q |
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| T |
48960851 |
atctgaaattcatagtaaatttgtcagagtagcaatgtaattactcttcagcaatcttcattgatttgagagtctttgggaaaatgttgcacaatcacga |
48960950 |
T |
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| Q |
578 |
tccacacaaggacaatgct |
596 |
Q |
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| T |
48960951 |
tacacacaaggacaatgct |
48960969 |
T |
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