View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_high_36 (Length: 278)

Name: NF2504_high_36
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_high_36
NF2504_high_36
[»] chr1 (2 HSPs)
chr1 (1-265)||(31431001-31431269)
chr1 (110-253)||(30486470-30486609)
[»] chr4 (4 HSPs)
chr4 (183-254)||(11679775-11679846)
chr4 (183-254)||(11688054-11688125)
chr4 (113-217)||(14337008-14337113)
chr4 (209-253)||(14336575-14336619)
[»] chr5 (1 HSPs)
chr5 (111-228)||(35669951-35670069)
[»] chr8 (1 HSPs)
chr8 (110-206)||(32134343-32134437)
[»] chr3 (2 HSPs)
chr3 (124-265)||(927963-928106)
chr3 (184-253)||(1555515-1555584)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 31431269 - 31431001
Alignment:
Q  1 aacaattttactagaagggctttgacaattttttgttgtcgttcatacttttatggatgataatgcaccaacatatttttt-gtggtcaataatgcaccg 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  31431269 aacaattttactagaagggctttgacaattttttattgtcgttcatacttttatggttgataatgcacgaacatatttttttgtggtcaataatgcaccg 31431170  T
Q  100 atannnnnnn---gtgtggccaatatatcactaacttatataaatatatgtcttttatgtttcacgtggtctacaaagcaccaaacatttatgtggataa 196  Q
    |||          |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31431169 atattttttttttgtgtggcctatatatcactaacttatataaatatatatcttttatgtttcacgtggtctacaaagcatcaaacatttatgtggataa 31431070  T
Q  197 tattacaccacattttatataagtaaatgtctttggttaatctacaattcattttatcatttgtttcat 265  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431069 tattgcaccatattttatataagtaaatgtctttggttaatctacaattcattttatcatttgtttcat 31431001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 253
Target Start/End: Original strand, 30486470 - 30486609
Alignment:
Q  110 gtgtggccaatatatcactaac-ttatataaatatatgtcttttatgtttcacgtggtctacaaagcaccaaacatttatgtggataatattacaccaca 208  Q
    ||||| ||||||||||| || | ||||||||||||||||||||||||||| | |||||  |||| ||||| |  ||||||| ||||||||||  |||||     
T  30486470 gtgtgaccaatatatcattagcattatataaatatatgtcttttatgttttatgtggtgcacaatgcaccgacaatttatgcggataatattgaaccac- 30486568  T
Q  209 ttttatataagtaaatgtctttggttaatctacaattcattttat 253  Q
        |||||| || |||||||| || |||||||| ||||||||||    
T  30486569 ----atataaatatatgtctttagtgaatctacatttcattttat 30486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 11679775 - 11679846
Alignment:
Q  183 atttatgtggataatattacaccacattttatataagtaaatgtctttggttaatctacaattcattttatc 254  Q
    |||||||| ||||||||| ||||||||||||||||| | ||||| || ||||||||||||||||||||||||    
T  11679775 atttatgttgataatattgcaccacattttatataaattaatgtattcggttaatctacaattcattttatc 11679846  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 11688054 - 11688125
Alignment:
Q  183 atttatgtggataatattacaccacattttatataagtaaatgtctttggttaatctacaattcattttatc 254  Q
    |||||||| ||||||||| ||||||||||||||||| | ||||| || ||||||||||||||||||||||||    
T  11688054 atttatgttgataatattgcaccacattttatataaattaatgtattcggttaatctacaattcattttatc 11688125  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 14337113 - 14337008
Alignment:
Q  113 tggccaatatatcactaac-ttatataaatatatgtcttttatgtttcacgtggtctacaaagcaccaaacatttatgtggataatattacaccacattt 211  Q
    ||||||||||| || |||| || |||||||||||||||||||  ||| |||||||  ||||| ||||||   ||||| ||||||||||| ||||||||||    
T  14337113 tggccaatataccattaacattgtataaatatatgtcttttaaattttacgtggtggacaaaacaccaatagtttatatggataatattgcaccacattt 14337014  T
Q  212 tatata 217  Q
    ||||||    
T  14337013 tatata 14337008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 14336619 - 14336575
Alignment:
Q  209 ttttatataagtaaatgtctttggttaatctacaattcattttat 253  Q
    |||||||||| || |||||| ||||||||||||||||||||||||    
T  14336619 ttttatataaatatatgtctctggttaatctacaattcattttat 14336575  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 35669951 - 35670069
Alignment:
Q  111 tgtggccaatatatcactaac-ttatataaatatatgtcttttatgtttcacgtggtctacaaagcaccaaacatttatgtggataatattacaccacat 209  Q
    |||||| |||| ||||||||| ||||||||||| ||||||||||||||| | |||||  |||||||||| |   ||||||||||||||||| |||||| |    
T  35669951 tgtggcaaatacatcactaacattatataaatagatgtcttttatgttttatgtggtggacaaagcaccgacagtttatgtggataatattgcaccacgt 35670050  T
Q  210 tttatataagtaaatgtct 228  Q
    |  |||||| || ||||||    
T  35670051 tcaatataaatatatgtct 35670069  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 32134437 - 32134343
Alignment:
Q  110 gtgtggccaatatatcactaac-ttatataaatatatgtcttttatgtttcacgtggtctacaaagcaccaaacatttatgtggataatattacacca 206  Q
    |||||| ||||||||||||||| |||||||||   ||||||||||||||| | ||||| |||||  || |||  |||||||||||||||||| |||||    
T  32134437 gtgtggtcaatatatcactaacgttatataaa---atgtcttttatgttttatgtggtgtacaatacatcaataatttatgtggataatattgcacca 32134343  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 927963 - 928106
Alignment:
Q  124 tcactaac-ttatataaatatatgtct-tttatgtttcacgtggtctacaaagcaccaaacatttatgtggataatattacaccacattttatataagta 221  Q
    |||||||| |||||||||||||||| | ||||||||| |  ||||  | |||||| | |  |||||||||||||| ||| | | ||||||||||||| ||    
T  927963 tcactaacattatataaatatatgtttctttatgttttatatggtggaaaaagcaacgacaatttatgtggataaaattgcccaacattttatataaata 928062  T
Q  222 aatgtctttggttaatctacaattcattttatcatttgtttcat 265  Q
     |||||| |  | |||||||| || |||||||| ||||||||||    
T  928063 tatgtctctaatcaatctacattttattttatcttttgtttcat 928106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 1555515 - 1555584
Alignment:
Q  184 tttatgtggataatattacaccacattttatataagtaaatgtctttggttaatctacaattcattttat 253  Q
    ||||||||||||||||| |||   ||||||||||| || ||||||   |||||| |||||||||||||||    
T  1555515 tttatgtggataatattgcactgtattttatataaatatatgtctccagttaatatacaattcattttat 1555584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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