View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_38 (Length: 273)
Name: NF2504_high_38
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_38 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 15331144 - 15330872
Alignment:
| Q |
10 |
acatcatcaacctattatatccatcacatcagtcttattttttctttctctctcaagatctatacactcatataggtgtacaccaaatattttcctataa |
109 |
Q |
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| T |
15331144 |
acatcatcaacctattatatccatcacatcggtcttattttttctttttctctcaagatctatacactcatataggtgtacaccaaata-tttcctataa |
15331046 |
T |
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| Q |
110 |
ctatcttaagaggtcattgcaatggaatctaaacttcatgtgaacctaatttaagggttaagtaaacttgatatatat-----------nnnnnnncaca |
198 |
Q |
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| T |
15331045 |
ttatctt-agaggtcattgcaatggaatctaaacttcatgtgaacctaatttaagggttaagtaaacttgatatatataaaaaaataaaaaaaaaacaca |
15330947 |
T |
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| Q |
199 |
tgatgaccccagtagtggtctcctttatgtatatccatccacactttcctttctttcttatccatcatcaagatg |
273 |
Q |
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| T |
15330946 |
tgatgaccccagtagtggtctcctttatgtatatccatccacactttcctttctttctaatccatcatcaagatg |
15330872 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 36789327 - 36789366
Alignment:
| Q |
70 |
tatacactcatataggtgtacaccaaatattttcctataa |
109 |
Q |
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| T |
36789327 |
tatacactcatatgggtgtacaccaaacattttcctataa |
36789366 |
T |
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