View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_43 (Length: 255)
Name: NF2504_high_43
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 2462659 - 2462863
Alignment:
| Q |
36 |
ctttcaaatctcttctaactcaagggctatgagccactatgattcattacaaattatgattcggtatggatgcataaaaacaaggaatgtgtttacaact |
135 |
Q |
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| T |
2462659 |
ctttcaaatctcttctaactcaagggctatgagccactatgattcattacaaattatgattcggtatggatgcataaaaacaaggaatgtgtttacaact |
2462758 |
T |
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| Q |
136 |
ttagtcaagaaaacaattattcattacaaaagaaaacattgcagctagtaaaaggaaaactgggagttggataaatcattatgtctaactcaatactgga |
235 |
Q |
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| T |
2462759 |
tcagtcaagaaaacaattattcattacaaaagaaaacattgcagctagtaaaaggaaaactgggagttggataaatcattatgtctaactcaatactgga |
2462858 |
T |
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| Q |
236 |
aaaac |
240 |
Q |
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||||| |
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| T |
2462859 |
aaaac |
2462863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 2485474 - 2485663
Alignment:
| Q |
51 |
taactcaagggctatgagccactatgattcattacaaattatgattcggtatggatgcataaaaacaaggaatgtgtttacaactttagtcaagaaaaca |
150 |
Q |
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| T |
2485474 |
taactcaagggctatgagccactatgattcattacaaattatgattcggtatggatgcattaaaacaaggaatgtgtttacaactttagtcaagaaaaca |
2485573 |
T |
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| Q |
151 |
attattcattacaaaagaaaacattgcagctagtaaaaggaaaactgggagttggataaatcattatgtctaactcaatactggaaaaac |
240 |
Q |
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| T |
2485574 |
attattcattacaaaagaaaacattgcagctagtaaaaggaaaactgggagttggataaatcattatgtctaactcaatacaggaaaaac |
2485663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 2476849 - 2476911
Alignment:
| Q |
117 |
aaggaatgtgtttacaactttagtcaagaaaacaattattcattacaaaagaaaacattgcag |
179 |
Q |
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| T |
2476849 |
aaggaatatgttttcaacttttgtcaagaaaacaattattcattacaaaagaaaacattgcag |
2476911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 5103135 - 5103065
Alignment:
| Q |
160 |
tacaaaagaaaacattgcagctagtaaaaggaaaactgggagttggataaatcattatgtctaactcaata |
230 |
Q |
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||||||| ||||||||||||| ||||||| ||||||| | |||||||||| ||||||||||||||||| |
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| T |
5103135 |
tacaaaacaaaacattgcagcaagtaaaataaaaactgaaatttggataaatagttatgtctaactcaata |
5103065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 2466787 - 2466859
Alignment:
| Q |
160 |
tacaaaagaaaacattgcagctagtaaaaggaa-aactgggagttggataaatcattatgtctaactcaatac |
231 |
Q |
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||||||| |||| |||||||| |||||||| || ||||| |||||| ||||| |||||||||||||| |||| |
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| T |
2466787 |
tacaaaacaaaatattgcagcaagtaaaagaaagaactgaaagttggttaaataattatgtctaactcgatac |
2466859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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