View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_44 (Length: 253)
Name: NF2504_high_44
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 33138046 - 33138185
Alignment:
| Q |
11 |
cacagaaaattcaaatcgctatatacgtgcaaagcttttttgggtaacatcgaaattaattcagatcgagaattagaaaaagcaaattgagtgaacatat |
110 |
Q |
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| T |
33138046 |
cacagaaaattcaaatcgctatatacgtgcaaagcttttttgagtaacattgaaattaattcagatcgagaattagaaagagcaaattgagtgaatatat |
33138145 |
T |
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| Q |
111 |
ctaagaacattgaaaaataacaatgcagtatgagtgtgtgt |
151 |
Q |
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| T |
33138146 |
ctaagaacattgaaaaataacaatgca-tatgagtgtgtgt |
33138185 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 33138221 - 33138294
Alignment:
| Q |
180 |
gggagttatgcatcttaatccaaaatgaccattgaaaacttatgttcaaaatctttatataaaattgaaaactt |
253 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33138221 |
gggagttatgcatcttaatccaaaatgaccattggaaacttatgttcaaaatctttatataaaattgaaaactt |
33138294 |
T |
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