View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_49 (Length: 244)
Name: NF2504_high_49
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21056468 - 21056243
Alignment:
| Q |
1 |
caaaatttatttccacggattctgcattttctatccctcaattttattatagtcaaagcagaattctccagataatttcaccaaatcaatagtgcacaat |
100 |
Q |
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| T |
21056468 |
caaaatttatttccacggattctgcattttctatccctcaattttattatagtcaaagcagaattctcgagataatttcaccaaatcaatagtgcacaat |
21056369 |
T |
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| Q |
101 |
ccttgtgcaacacatgagaatttgacttctatttcattattatatannnnnnnnnatcaatttttgt-cagtataatagcacataaatacctatcatagt |
199 |
Q |
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| T |
21056368 |
ccttgtgaaccacatgagaatttgacttctatttcattattatata-ttttttttatcaatttttgtgcagtataatagcacataaatacctatcatagt |
21056270 |
T |
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| Q |
200 |
aatttcccaaacgaatcaaatacatgc |
226 |
Q |
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| T |
21056269 |
aatttcccaaacgaatcaaatacatgc |
21056243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 26365516 - 26365585
Alignment:
| Q |
20 |
ttctgcattttctatccct-caattttattatagtcaaagcagaattctccagataatttcaccaaatca |
88 |
Q |
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|||||||||||||||||| | || ||||| || |||||||| |||| |||||||||| ||||||||||| |
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| T |
26365516 |
ttctgcattttctatcccaactatcttattgtattcaaagcaaaattttccagataatatcaccaaatca |
26365585 |
T |
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