View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_54 (Length: 238)
Name: NF2504_high_54
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33138373 - 33138471
Alignment:
| Q |
1 |
ttattccctccaaaataatttaaagtgctttaaattaatgcgaatataaataataattattttttgaagtgtagtcatttatatattattagctcaaaa |
99 |
Q |
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| T |
33138373 |
ttattccctccaaaataatttaaagtgctttaaattaatacgaatataaataataattattttttgaagtgtaatcatttatatattattagctcaaaa |
33138471 |
T |
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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 33138479 - 33138564
Alignment:
| Q |
136 |
caatgaatgttgtggccaacttctacaaatgccctgaatgacacgctatttttggataaaaatgaaggaagctttggactttagtt |
221 |
Q |
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| T |
33138479 |
caatgaatgttgtggccaacttctacaaatgccctgaatgacacgctatttttggataaaaatgaaggaagctttggactttagtt |
33138564 |
T |
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