View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_59 (Length: 231)
Name: NF2504_high_59
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 30803266 - 30803061
Alignment:
| Q |
18 |
gaaatatgagtaatatgatgttcaactaaagactcttttcttatagtagattgaaccaaa-actttattttccgttttcaaccaaattcttgattcaata |
116 |
Q |
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| T |
30803266 |
gaaatatgagtaatatgatgttcaactaaagactcttttcttatagtagattcaaccaaatactttattttccgttttcaaccaaattcttgattcaata |
30803167 |
T |
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| Q |
117 |
aatgtatcattttttatttaaaaaattggattagtgtgttaattaacatgtctataatgtatcacttcctctcccatcatttaataacgagcatatagta |
216 |
Q |
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| T |
30803166 |
aatgtatcattttttatttaaaaaattggattagtgtgttaattaacatttctataatgtatcacttcctctcccatcatttaataacgagcatatagtg |
30803067 |
T |
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| Q |
217 |
taatct |
222 |
Q |
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|||||| |
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| T |
30803066 |
taatct |
30803061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 30801527 - 30801383
Alignment:
| Q |
78 |
actttattttccgttttcaaccaaattcttgattcaataaatgtatcattttttatttaaaaaattggattagtgtgttaattaacatgtctataatgta |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30801527 |
actttattttccgttttcaaccaaattcttgattcaataaatgtatcattttttatttaaaaaattggattagtgtgttaattaacatttctataatgta |
30801428 |
T |
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| Q |
178 |
tcacttcctctcccatcatttaataacgagcatatagtataatct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30801427 |
tcacttcctctcccatcatttaataacgagcatatagtgtaatct |
30801383 |
T |
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