View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2504_high_9 (Length: 474)
Name: NF2504_high_9
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 33159993 - 33160426
Alignment:
| Q |
13 |
gaacagttccaaggaggaatcctgatataaaacctccaatgcttgaaaaattgtctacataaggcagaaaaccaaggaggaagttgcacacaaagataaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33159993 |
gaacagttccaaggaggaatcctgatataaaacctccaatgcttgaaaaattgtctacataaggcagaaaaccaaggaggaagttgcacacaaagataaa |
33160092 |
T |
|
| Q |
113 |
gacgaatgatgctacttctgaaatctgcattccaccaaagaaataattgatcaaaaatcaatcatgcctaacaatgagaaacagctatgaggtgaaaaac |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160093 |
gacgaaagatgctacttctgaaatctgcattccaccaaagaaaaaattgatcaaaaatcaatcatgcctaacaatgagaaacagctatgaggtgaaaaac |
33160192 |
T |
|
| Q |
213 |
taagaagcacctttttggtatgatatttccagttccaaacaagttctgaaagcaatgctcctagtaatccaaatagagcaccagatgaaccaacagcagg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
33160193 |
taagaagcacctttttggtatgatatttccagttccaaacaagttctgaaagcaatgctcctagtaatccaaatagagcaccagaagaaccaacaacagg |
33160292 |
T |
|
| Q |
313 |
gatgttttgaagaaaaagagatgccattaaggcacccacaaaagcagatagtatatagactataccaatccttactgcaaattaaaaacaaaacgtcata |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33160293 |
gatgttttgaagaaaaagagatgccattaaggcacccacaaaagcagatagtatatagactataccaatccttactgcaaattaaaaacaaaacgtcata |
33160392 |
T |
|
| Q |
413 |
aattctaataacaagaaagcatttcaatatgcaa |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33160393 |
aattctaataacaagaaagcatttcaatatgcaa |
33160426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University