View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_1 (Length: 650)
Name: NF2504_low_1
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 109 - 634
Target Start/End: Complemental strand, 28105641 - 28105113
Alignment:
| Q |
109 |
atgttcacttgttatggataactccaactctgtttaattaattagaattatt---ctccttgattaattactagtatctcttttagnnnnnnnnnncctt |
205 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| | || |
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| T |
28105641 |
atgttcacttgttatgtataactccaactctgtttaattaattagaattattattctccttctttaattactagtacctctttt-gtttatttatttttt |
28105543 |
T |
|
| Q |
206 |
tcttttaatttaaaatggtggattcagttgagattggataataaagcattcaaattaaattacattgaaattcatgaaaataagaagatcctactatact |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
28105542 |
tcttttaatttaaaatggtggattcagttgagattggataataaagcattctaattaaattacattgaaattcatgaaagtaagaagatcctactacact |
28105443 |
T |
|
| Q |
306 |
ccta----gttcaattttgagtatatacctagttactttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgagaaagggccctta |
401 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28105442 |
cctaaaaagttcaattttgagtatatacctagttactttctagagctgaatgaagatgagtatttagatgggttgtttctgttctgagaaagggccctta |
28105343 |
T |
|
| Q |
402 |
agagtgtggtcgttggtgtttagatggcttggtattggtttt-attactccatcaaaccttttgtttttgtacatttggaatgttttataggagagtctc |
500 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28105342 |
-gagtgtggccgttggtgtttagatgggttggtattggtttttattactccatcaaacctttt--ttttgtacatttggaatgttttataggagagtctc |
28105246 |
T |
|
| Q |
501 |
ggtccaagaagtttagaaggggttattggttaatttggcactggtttgggttattctgtaggcgcaaaatgatcatatattcaagaataggtcaaagaga |
600 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
28105245 |
ggtcgaagaagtttagaaggggttattggttaatttggcactggtttgggttattctgtaggcgaaaaatgatcatatattcaagaataggtc-aagaga |
28105147 |
T |
|
| Q |
601 |
ttatggtgagatagtggatgaaataaaggtagtg |
634 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
28105146 |
ttatggtgagatagtggatgaaataaaggtagtg |
28105113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 107 - 592
Target Start/End: Original strand, 28087942 - 28088422
Alignment:
| Q |
107 |
caatgttcacttgttatggataactccaactctgtttaattaattagaattattctccttgattaattactagtatctcttttagnnnnnnnnnnccttt |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
28087942 |
caatgttcacttgttatggataactccaactctgtttaattaattagaattattctccttgattaattactagtacctcttttagttttttttttccttt |
28088041 |
T |
|
| Q |
207 |
cttttaatttaaaatggtggattcagttgagattggataataaagcattcaaattaaattacattgaaattcatgaaaataagaagatcctactatactc |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28088042 |
cttttaatttaaaatggccgattcagttgagattggataataaagcattcgaattaaattacattgaaattcatgaaaataagaagatcctactatactc |
28088141 |
T |
|
| Q |
307 |
ctagttcaattttgagtatatacctagttactttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgagaaagggcccttaagagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28088142 |
ctagttcaattttgagtatatacctagttactttctagagctgaatgaagaagagtatttagatgggttgtttctgttctgagaaagggcccttaagagt |
28088241 |
T |
|
| Q |
407 |
gtggtcgttggtgtttagatggcttggtattggttttattactccatcaaaccttttgtttttgtacatttggaatgttttataggagagtctcggtcca |
506 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||| || |
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| T |
28088242 |
gtggtcgttagtgtttagatggcttggtattggttttattactccatcaaac-----ttttttctacatttggaatgttttatagaggaggctcagttgt |
28088336 |
T |
|
| Q |
507 |
agaagtttagaaggggttattggttaatttggcactggtttgggttattctgtaggcgcaaaatgatcatatattcaagaataggt |
592 |
Q |
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||||| |||||||| |||||||||||||| |||||||||||||||| ||| | |||| ||| ||||||||||||| |||||||| |
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| T |
28088337 |
agaagcttagaaggagttattggttaattcggcactggtttgggttcttcggaaggcatgaaacgatcatatattcaggaataggt |
28088422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 107 - 357
Target Start/End: Complemental strand, 26643340 - 26643082
Alignment:
| Q |
107 |
caatgttcacttgttatggataactccaactctgtttaattaattagaattattctccttgattaattactagtatctcttttagnnnnnnnnnn--cct |
204 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| | |||||||||||| |||| |||| ||| |
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| T |
26643340 |
caatgttcacttgttatgtataactttaactctgtttatttaattagaattattctcct-gtttaattactagttcctctattagtttagttttttccct |
26643242 |
T |
|
| Q |
205 |
ttcttttaatttaaaatggtg--gattcagttgagattggataataaagcattcaaattaaattacattgaaattcatgaaaataag-aagatcctacta |
301 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26643241 |
ttcttttaatttaaaatgtggccgattcagttgagattggataataaagcattcaaattaaattacattgaaattcatgaaaataagaaagatcctacta |
26643142 |
T |
|
| Q |
302 |
tactcct----agttcaattttgagtatatacctagttactttctagagctgaatgaaga |
357 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26643141 |
tactcctacaaagttcagttttgagtatatacctagttactttctagagctgaatgaaga |
26643082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 538 - 634
Target Start/End: Complemental strand, 26642442 - 26642349
Alignment:
| Q |
538 |
gcactggtttgggttattctgtaggcgcaaaatgatcatatattcaagaataggtcaaagagattatggtgagatagtggatgaaataaaggtagtg |
634 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
26642442 |
gcactggtttgggttattctgtaggcgcaaaatgatcatatattcaagaataggtc-aagagattatggt--gatagtggatgaaataaaggtagtg |
26642349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 28087860 - 28087913
Alignment:
| Q |
17 |
actagatacatccttgtgtgtattatttttctagaatggttgttgtcatcttag |
70 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28087860 |
actaaatacatccttgtgtgtattatttttctagaatggttgttgtcatcttag |
28087913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 28102906 - 28102854
Alignment:
| Q |
243 |
ataataaagcattcaaattaaattacattgaaattcatgaaaataagaagatc |
295 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28102906 |
ataataaagcatccaaattaaattacattgaaattcatgaaaataagaagatc |
28102854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 28103082 - 28103029
Alignment:
| Q |
17 |
actagatacatccttgtgtgtattatttttctagaatggttgttgtcatcttag |
70 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |
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|
| T |
28103082 |
actagatacatccttgtgtgtattatttttctaaaattgttgttgtcttcttag |
28103029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 26643431 - 26643378
Alignment:
| Q |
17 |
actagatacatccttgtgtgtattatttttctagaatggttgttgtcatcttag |
70 |
Q |
| |
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||||| |||||||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
26643431 |
actaggtacatccttgcgtgtgttatttttctagaatggttgctgtcatcttag |
26643378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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