View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2504_low_10 (Length: 544)
Name: NF2504_low_10
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_10 |
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| [»] scaffold0243 (1 HSPs) |
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| [»] scaffold1890 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0243 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 21340 - 21855
Alignment:
| Q |
19 |
acctgcgcacacagtcaattggacacacaaaaatatttcaaaaa-ggcttgaaaaccaagacctagccaccgcaatttacaattcagtttctgcatttt- |
116 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21340 |
acctgcacgcacagtcaat--gacacacaaaaatatttcaaaaaaggcttgaaaaccaagacctagccaccgcaatttacaattcagttt-tgcattttt |
21436 |
T |
|
| Q |
117 |
cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21437 |
cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattga |
21536 |
T |
|
| Q |
217 |
tatataaatt-gaaaaaactgta------gcaattctgatgtttcaattgtcttttatttcnnnnnnnaattcacgttgcttctttcatgttgctgtgct |
309 |
Q |
| |
|
||||||| || |||||||| || |||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
21537 |
tatataattttgaaaaaaccttatttcatgcaactctgatgtctcaattgtcttttatttctttttt-aattcaagttgcttctttcatgttgctgtgct |
21635 |
T |
|
| Q |
310 |
tatattttgctgctatgatttgattcttattcatattgttttcagtatggccgaagcttttgttattgctgcttaattactttcacgtcgctgttccaaa |
409 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||| | |||||||| |
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|
| T |
21636 |
catattttgctgctatgatttaattcttatgcatattgttttcacaatggtcgaggcttt-gttattgctgcttaattactttcacgttacggttccaaa |
21734 |
T |
|
| Q |
410 |
tccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattgctggattccaattcattccatgctcc |
509 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||| |
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|
| T |
21735 |
tccaaattaattgtcgttttatgcttgaagttctgcattgcttcttttgttttccatcggttatgttataattgctggattcccattcattccatgttcc |
21834 |
T |
|
| Q |
510 |
atattgatgcaatttcatatt |
530 |
Q |
| |
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|||||||||||||| |||||| |
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|
| T |
21835 |
atattgatgcaattccatatt |
21855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 19244003 - 19243489
Alignment:
| Q |
19 |
acctgcgcacacagtcaattggacacacaaaaatatttcaaaaag--gcttgaaaaccaagacctagccaccgcaatttacaattcagtttctgcatttt |
116 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
19244003 |
acctgcacacacagtcaat--gacacacaaaa-tatttcaaaaaaaagcttgaaaaccaagacctagccaccacaatttacaattcagtt-ctgcatttt |
19243908 |
T |
|
| Q |
117 |
-cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19243907 |
tcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattg |
19243808 |
T |
|
| Q |
216 |
atatataaattgaaaaaactgta------gcaattctgatgtttcaattgtcttttatttcnnnnnnnaattcacgttgcttctttcatgttgctgtgct |
309 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||| |||||| |
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| T |
19243807 |
atatataaattggaaaaaccttatttcatgcaattctgatgtctcaattgtcttttatttctttttt-aattcacattgcttctttcatattgttgtgct |
19243709 |
T |
|
| Q |
310 |
tatattttgctgctatgatttgattcttattcatattgttttcagtatggccgaagcttttgttattgctgcttaattactttcacgtcgctgttccaaa |
409 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||| | |||||||| |
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|
| T |
19243708 |
tatattttgctgctatgatttaattcttatgcatattgttttcacaatggtcgaggcttt-gttattgctgcttaattactttcacgttacggttccaaa |
19243610 |
T |
|
| Q |
410 |
tccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattgctggattccaattcattccatgctcc |
509 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
19243609 |
tccaaattaattgtcgttttatgctttatgttctgtattgcttcttttgttttccatcggttttgttataattgctggattccaattcattccatgttcc |
19243510 |
T |
|
| Q |
510 |
atattgatgcaatttcatatt |
530 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
19243509 |
atattgatgcaattccatatt |
19243489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 39867015 - 39867518
Alignment:
| Q |
19 |
acctgcgcacacagtcaattggacacacaaaaatatttcaaaaag----gcttgaaaaccaagacctagccaccgcaatttacaattcagtttctgcatt |
114 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
39867015 |
acctgcacacacagttaattggacaca--aaattatttcaaaaaaaaaagcttgaaaaccaagacctagccaccgcaatttacaattcagtt-ctgcatt |
39867111 |
T |
|
| Q |
115 |
ttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39867112 |
ttcctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgatt |
39867211 |
T |
|
| Q |
215 |
gatatataaattgaaaaaactgta------gcaattctgatgtttcaattgtcttttatttcnnnnnnnaattcacgttgcttctttcatgttgctgtgc |
308 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
39867212 |
gatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttatttctttttt-aattcacgttgcttctttcatgttgttgtgc |
39867310 |
T |
|
| Q |
309 |
ttatattttgctgctatgatttgattcttattcatattgttttcagtatggccgaagcttttgttattgctgcttaattactttcacgtcgctgttccaa |
408 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
39867311 |
tcatattttgctgctatgatttaattcttatgcatattgttttcactatggccgaggcttttgttactgctgcttaattactttcacgttattgttccaa |
39867410 |
T |
|
| Q |
409 |
atccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttccatcgattatgtgataattgctggattccaattcattccatgctc |
508 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
39867411 |
atccaaattaattgtcgttttatgctttaagttctgtattgcttctttggttttccatcggttatgt--------------tccaattcattccatgttc |
39867496 |
T |
|
| Q |
509 |
catattgatgcaatttcatatt |
530 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
39867497 |
catattgatgcaattccatatt |
39867518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1890 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold1890
Description:
Target: scaffold1890; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 487 - 151
Alignment:
| Q |
19 |
acctgcgcacacagtcaattggacacacaaaaatatttcaaaaag-gcttgaaaaccaagacctagccaccgcaatttacaattcagtttctgcatttt- |
116 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
487 |
acctgcacacacagtcaat--gacacacaaaaatatttcaaaaaaagctttaaaaccaagacctagccaccgcaatttacaattcagtt-ctgcattttt |
391 |
T |
|
| Q |
117 |
cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
390 |
cctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcactcaatttaaatctgcagccgccgattga |
291 |
T |
|
| Q |
217 |
tatataaattgaaaaaactgta------gcaattctgatgtttcaattgtcttttatttcnnnnnnnaattcacgttgcttctttcatgttgctgtgctt |
310 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
290 |
tatataaattggaaaaaccttatttcatgcaattctgatgtctcaattgtcttttatttc-ttttttaattcacgttgcttctttcatgttgttgtgctc |
192 |
T |
|
| Q |
311 |
atattttgctgctatgatttgattcttattcatattgtttt |
351 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
191 |
atattttgctgctatgatttaattcttatgcatattgtttt |
151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 106018 - 105771
Alignment:
| Q |
19 |
acctgcgcacacagtcaattggacacacaaaaatatttcaaaaag-gcttgaaaaccaagacctagccaccgcaatttacaattcagtttctgcattttc |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
106018 |
acctgcacacacagtcaatgggacacacaaaaatatttcaaaaaaagcttgaaatccaagacctagccaccgcaatttacaattcactta-tgcattttc |
105920 |
T |
|
| Q |
118 |
ctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105919 |
ctttgaattcaaaagttttgcattgtttactttattttcatcgttgctgctcatggtttaattccattcattcaatttaaatctgcagccgccgattgat |
105820 |
T |
|
| Q |
218 |
atataaattgaaaaaactgta------gcaattctgatgtttcaattgt |
260 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||||||||| |
|
|
| T |
105819 |
atataaattggaaaaaccttatttcatgcaattctgatgtttcaattgt |
105771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 174 - 530
Target Start/End: Original strand, 22704654 - 22705005
Alignment:
| Q |
174 |
tttaattccattcattcaatttaaatctgcagccgccgattgatatataaattgaaaaaactgta------gcaattctgatgtttcaattgtcttttat |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
22704654 |
tttaattccattcattcaatttaaatctgcagctgccgattgatatataaattggaaaaaccttatttcatgcaattctgatgtttcaattgtcttttat |
22704753 |
T |
|
| Q |
268 |
ttcnnnnnnnaattcacgttgcttctttcatgttgctgtgcttatattttgctgctatgatttgattcttattcat----attgttttcagtatggccga |
363 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||| ||| | |||||||| ||||||||| |
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|
| T |
22704754 |
ttctttttt-aattcacgttgcttctttcatgttgttgtgctcatattttgctgttatgatttaattcttatgcatgcatactgttttcactatggccga |
22704852 |
T |
|
| Q |
364 |
agcttttgttattgctgcttaattactttcacgtcgctgttccaaatccaaattaattgccgttttatgctttaagttctgcattgcttcttttgttttc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22704853 |
ggcttttgttattgctgcttaattactttcacgtttctgctccgaatacaaattaattgtcgttttatgctttaagttctgtattgcttcttttgttttc |
22704952 |
T |
|
| Q |
464 |
catcgattatgtgataattgctggattccaattcattccatgctccatattgatgcaatttcatatt |
530 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
22704953 |
catcggttatgt--------------tccaattcattccatgttccatattgatgcaattccatatt |
22705005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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