View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_14 (Length: 506)

Name: NF2504_low_14
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_14
NF2504_low_14
[»] chr4 (5 HSPs)
chr4 (178-487)||(44574483-44574793)
chr4 (17-100)||(44574235-44574318)
chr4 (96-162)||(44574342-44574408)
chr4 (34-101)||(48795730-48795797)
chr4 (96-162)||(48795640-48795707)
[»] chr7 (2 HSPs)
chr7 (17-100)||(22490054-22490137)
chr7 (96-155)||(22490161-22490221)
[»] chr5 (3 HSPs)
chr5 (17-100)||(25383268-25383351)
chr5 (96-162)||(25383177-25383244)
chr5 (178-213)||(25383067-25383102)
[»] chr6 (2 HSPs)
chr6 (111-162)||(10123184-10123235)
chr6 (178-207)||(10123310-10123339)
[»] chr1 (2 HSPs)
chr1 (111-162)||(28244940-28244991)
chr1 (178-207)||(28245066-28245095)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 178 - 487
Target Start/End: Original strand, 44574483 - 44574793
Alignment:
Q  178 attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574483 attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt 44574582  T
Q  278 aactgattgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata 377  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574583 aacagatcgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata 44574682  T
Q  378 taaaactagaccaaaactaaactacatggtgcttctctaaggaaaaag-atctaacaatagctaaaatagaactagagtttatgaaatttaaactttagc 476  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  44574683 tacaactagaccaaaactaaactacatggtgcttctctaaggaaaaagaatctaacaataactaaaagagaactagagtttatgaaatttaaactttagc 44574782  T
Q  477 agcatgagagt 487  Q
    |||||||||||    
T  44574783 agcatgagagt 44574793  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 44574235 - 44574318
Alignment:
Q  17 atattttaagagattgatgaagtctgagtttgaaatactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574235 atattttaagagattgatgaagtctgagtttgaaatactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 44574318  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 44574342 - 44574408
Alignment:
Q  96 tgaaagaaattatgttatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574342 tgaaagaaattatgttatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 44574408  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 48795797 - 48795730
Alignment:
Q  34 tgaagtctgagtttgaaatactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaag 101  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  48795797 tgaagtctgagtttgaaatgctaatatagaataattgtcatactttcttggaaggaaacttgtgaaag 48795730  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 48795707 - 48795640
Alignment:
Q  96 tgaaagaaattatgtta-tgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 162  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48795707 tgaaagaaattatgtaaatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacaaagacat 48795640  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 22490054 - 22490137
Alignment:
Q  17 atattttaagagattgatgaagtctgagtttgaaatactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  22490054 atattttaagagattgatgaagtctgagtttgaaatgctaatatagaagaattgtcatactttcttgaaaggaaacttgtgaaa 22490137  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 22490161 - 22490221
Alignment:
Q  96 tgaaagaaattatgtta-tgaggtgctaaaaatgttcaatatgatgaagtgtaatgttaca 155  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  22490161 tgaaagaaattatgtaagtgaggtgctaaaaatgttcaatatgatgaagtgtaatgttaca 22490221  T

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Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 25383351 - 25383268
Alignment:
Q  17 atattttaagagattgatgaagtctgagtttgaaatactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25383351 atattttaagagattgatgaagtctgagtttgaaatgctaatatagaagaattgtcatactttcttgaaaggaaacttgtgaaa 25383268  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 25383244 - 25383177
Alignment:
Q  96 tgaaagaaattatgtta-tgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 162  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  25383244 tgaaagaaattatgtaaatgaggtgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 25383177  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 25383102 - 25383067
Alignment:
Q  178 attggatcattgacacaatgtacatgtattgtgaaa 213  Q
    |||||||||||||||||||||||||||||| |||||    
T  25383102 attggatcattgacacaatgtacatgtattatgaaa 25383067  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 10123184 - 10123235
Alignment:
Q  111 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 162  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  10123184 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 10123235  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 10123310 - 10123339
Alignment:
Q  178 attggatcattgacacaatgtacatgtatt 207  Q
    ||||||||||||||||||||||||||||||    
T  10123310 attggatcattgacacaatgtacatgtatt 10123339  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 28244940 - 28244991
Alignment:
Q  111 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 162  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  28244940 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 28244991  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 28245066 - 28245095
Alignment:
Q  178 attggatcattgacacaatgtacatgtatt 207  Q
    ||||||||||||||||||||||||||||||    
T  28245066 attggatcattgacacaatgtacatgtatt 28245095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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