View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_15 (Length: 480)
Name: NF2504_low_15
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 33965328 - 33965585
Alignment:
| Q |
1 |
aagttttatttcttctctaatattttctaaaagtgaggttcccttccatc------------gttagccaaatcgcacgcaaaaccagaatctggaaacc |
88 |
Q |
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| T |
33965328 |
aagttttatttcttctctaatattttctaaaagtgaggttcccttccctcattccttccctcgttagccaaatcactcgcaaaaccagaatctggaaacc |
33965427 |
T |
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| Q |
89 |
ctaaaggatcaattgcttctggttctcgttccaatcgaatcctatctgaatcattccgtttgcaaatcgtttgttcttttgggaaggtaaggtaatgttt |
188 |
Q |
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| T |
33965428 |
ctaaaggatcaattgcttctggttctccttccaatcgaatcctatctgaatcattccgtttgcaaatcgtttgttcttttgggaaggtaaggtaatgttt |
33965527 |
T |
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| Q |
189 |
ttctcgttctttgtagtttgcttcaattgttgaagtttgttttaatatcgatgcatag |
246 |
Q |
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| T |
33965528 |
ttctcgttctttgtagtttgcttcaattgttgaagtttgttttaatatcgatgcatag |
33965585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 290 - 463
Target Start/End: Original strand, 33965626 - 33965799
Alignment:
| Q |
290 |
attttatttaattcgaagatggaagctagttctagagatgtgcaaggtcaaggagaggattcaatgaaagtatactacagagggatgagtttggctatga |
389 |
Q |
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| T |
33965626 |
attttattttattcgaagatggaagctagttctagagatgtgcaaggtcaaggagaggattcaatgaaagtatactacagagggatgagtttggctatga |
33965725 |
T |
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| Q |
390 |
atgctttgtttggttctagagcggtggtgcaaggccaaggaaagtcaatggaagtattcagggaggggatttgt |
463 |
Q |
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| T |
33965726 |
atgctttgtttggttctagagcggtggtgcaaggccaaggaaagtcaatggaagtattcagggaggggatttgt |
33965799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 33970096 - 33970161
Alignment:
| Q |
297 |
ttaattcgaagatggaagctagttctagagatgtgcaaggtcaaggagaggattcaatgaaagtat |
362 |
Q |
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||||||| ||||||||| | |||||| |||||||||||| || |||||||||||||||||||| |
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| T |
33970096 |
ttaattctcagatggaaggttgttctaatgatgtgcaaggttcagaagaggattcaatgaaagtat |
33970161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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