View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_17 (Length: 451)

Name: NF2504_low_17
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_17
NF2504_low_17
[»] chr2 (5 HSPs)
chr2 (82-418)||(44923588-44923925)
chr2 (419-451)||(561675-561707)
chr2 (420-451)||(35851926-35851957)
chr2 (421-451)||(32361026-32361056)
chr2 (422-451)||(44587902-44587931)
[»] chr8 (10 HSPs)
chr8 (82-419)||(510001-510339)
chr8 (82-420)||(29781131-29781467)
chr8 (417-451)||(13643007-13643041)
chr8 (417-451)||(13743432-13743466)
chr8 (375-421)||(23124864-23124909)
chr8 (422-451)||(16394218-16394247)
chr8 (422-451)||(29566700-29566729)
chr8 (422-451)||(30675729-30675758)
chr8 (422-451)||(39751629-39751658)
chr8 (419-451)||(168463-168495)
[»] chr3 (10 HSPs)
chr3 (82-365)||(8195409-8195692)
chr3 (82-365)||(1412174-1412457)
chr3 (418-451)||(52520677-52520710)
chr3 (419-451)||(46352631-46352663)
chr3 (421-451)||(272219-272249)
chr3 (421-451)||(49893330-49893360)
chr3 (376-417)||(15214900-15214940)
chr3 (376-417)||(15254119-15254159)
chr3 (422-451)||(39074419-39074448)
chr3 (419-451)||(18014669-18014701)
[»] chr4 (10 HSPs)
chr4 (82-417)||(35579161-35579496)
chr4 (419-451)||(789687-789719)
chr4 (419-451)||(15186240-15186272)
chr4 (420-451)||(16536046-16536077)
chr4 (420-451)||(43202540-43202571)
chr4 (421-451)||(4268979-4269009)
chr4 (421-451)||(18068036-18068066)
chr4 (422-451)||(54897308-54897337)
chr4 (419-451)||(29591186-29591218)
chr4 (419-451)||(47232029-47232061)
[»] chr1 (11 HSPs)
chr1 (82-320)||(46120357-46120595)
chr1 (316-419)||(46119661-46119765)
chr1 (420-451)||(28726063-28726094)
chr1 (420-451)||(29683193-29683224)
chr1 (420-451)||(42770147-42770178)
chr1 (417-451)||(12072219-12072253)
chr1 (421-451)||(13961211-13961241)
chr1 (421-451)||(29657770-29657800)
chr1 (422-451)||(38595910-38595939)
chr1 (419-451)||(18043159-18043191)
chr1 (419-451)||(30657605-30657637)
[»] chr6 (6 HSPs)
chr6 (417-450)||(32929666-32929699)
chr6 (417-451)||(3515761-3515795)
chr6 (421-451)||(27433491-27433521)
chr6 (422-451)||(392096-392125)
chr6 (374-419)||(21686117-21686161)
chr6 (418-451)||(34706716-34706749)
[»] chr7 (5 HSPs)
chr7 (420-451)||(12218593-12218624)
chr7 (420-451)||(18485959-18485990)
chr7 (420-451)||(34333282-34333313)
chr7 (422-451)||(24438477-24438506)
chr7 (419-451)||(29993644-29993676)
[»] chr5 (6 HSPs)
chr5 (420-451)||(10054509-10054540)
chr5 (417-451)||(13661803-13661837)
chr5 (422-451)||(10069969-10069998)
chr5 (422-451)||(11958124-11958153)
chr5 (418-447)||(35132518-35132547)
chr5 (419-451)||(21945018-21945050)
[»] scaffold0003 (1 HSPs)
scaffold0003 (421-451)||(53842-53872)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 82 - 418
Target Start/End: Original strand, 44923588 - 44923925
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44923588 tgtgtagcctgatcgtaagcattaaaaaacatagagaaagaaacttactttggggacaatggaacggaaaaaagactaacaaagggtaagattgatccgt 44923687  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
     ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44923688 aaccgccgtttttggcaagatgtggtgcttctctcacatattactgtcttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 44923787  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttttgataaaactgctaactaacatcaagtaagggcattttgggattt--nnnnnnnngctaca 379  Q
    ||||||| |||| || |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||          ||||||    
T  44923788 tatgttataactactgccaaggagttatatttttatttttgataaaactgctaactaacatcaaataagggcattttgggatttacaaaaaaaggctaca 44923887  T
Q  380 ccaaaaaattgtattgccttttattaataggtatagatt 418  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  44923888 ccaaaaaatagtattgcc-tttattaataggtatagatt 44923925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 561707 - 561675
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||||    
T  561707 aaagggaaatgctaaccggtgcccccggggcac 561675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 35851957 - 35851926
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  35851957 aagggaaatgctaaccggtgcccccggggcac 35851926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Complemental strand, 32361056 - 32361026
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  32361056 agggaaatgctaaccggtgcccccggggcac 32361026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 44587902 - 44587931
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  44587902 gggaaatgctaaccggtgcccccggggcac 44587931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 82 - 419
Target Start/End: Original strand, 510001 - 510339
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  510001 tgtgtagcctgatcgtaagcattaaaaaacatagagaaagaaacttactttgaggacaatggaacggaaaaaagactaacaaagggtaagattgatccgt 510100  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
     ||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  510101 aaccgctgtttttggcaagatgtggtgcttctctcacatattactgtcttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 510200  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttttgataaaactgctaactaacatcaagtaagggcattttgggattt--nnnnnnnngctaca 379  Q
    ||||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||    
T  510201 tatgttataactactgccaaggagttatatttttgtttttgataaaactgctaactaacatcaagtaagggcattttgggatttacaaaaaaaaactaca 510300  T
Q  380 ccaaaaaattgtattgccttttattaataggtatagatta 419  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  510301 ccaaaaaatagtattgcc-tttattaataggtatagatta 510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 82 - 420
Target Start/End: Complemental strand, 29781467 - 29781131
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||    
T  29781467 tgtgtagcctgatcgtaagcattaaaaaacatagagaaagaaacttagtttggggataatggaacgaaaaaaagactaacaaagggtaagactgatccgt 29781368  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
     ||||||||||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29781367 aaccgccgtttttggcaagatgtgg--cttctctcacatattattatcttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 29781270  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttttgataaaactgctaactaacatcaagtaagggcattttgggattt--nnnnnnnngctaca 379  Q
    |||||||  |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||          ||||||    
T  29781269 tatgtta-tactgctgccaaggagttatatttttgtttttgataaaattgctaactaacatcaagtaagggcattttgggatttacaaaaaaaggctaca 29781171  T
Q  380 ccaaaaaattgtattgccttttattaataggtatagattaa 420  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  29781170 ccaaaaaatagtattgcc-tttattaataggtatagattaa 29781131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 13643007 - 13643041
Alignment:
Q  417 ttaaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||| |||||||||||||||||||||||||||    
T  13643007 ttaaaggaaaatgctaaccggtgcccccggggcac 13643041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 13743432 - 13743466
Alignment:
Q  417 ttaaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||| |||||||||||||||||||||||||||    
T  13743432 ttaaaggaaaatgctaaccggtgcccccggggcac 13743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 23124864 - 23124909
Alignment:
Q  375 ctacaccaaaaaattgtattgccttttattaataggtatagattaaa 421  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||    
T  23124864 ctacaccaaaaaataatattgccttt-attaataggtatagattaaa 23124909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Complemental strand, 16394247 - 16394218
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  16394247 gggaaatgctaaccggtgcccccggggcac 16394218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 29566700 - 29566729
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  29566700 gggaaatgctaaccggtgcccccggggcac 29566729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Complemental strand, 30675758 - 30675729
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  30675758 gggaaatgctaaccggtgcccccggggcac 30675729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Complemental strand, 39751658 - 39751629
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  39751658 gggaaatgctaaccggtgcccccggggcac 39751629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 168463 - 168495
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||| |||||||||    
T  168463 aaagggaaatgctaaccggtgcctccggggcac 168495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 82 - 365
Target Start/End: Complemental strand, 8195692 - 8195409
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8195692 tgtgtagcctgatcgtaagcattaaaaaacatggagaaagaaacttactttggggacaatggaacggaaaaaagactaacaaagggtaagattgatccgt 8195593  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
     |||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8195592 aaccgccgtttttggtaagatgtggtgcttctctcacatattactgtcttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 8195493  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttttgataaaactgctaactaacatcaagtaagggcattttgggattt 365  Q
    ||||||| |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8195492 tatgttataactactgccaaggagttatatttttgtttttgataaaactgcaaactaacatcaagtaagggcattttgggattt 8195409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 82 - 365
Target Start/End: Complemental strand, 1412457 - 1412174
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||  ||    
T  1412457 tgtgtagcctgatcgtaagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaataaagggtaagactgattagt 1412358  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  1412357 taccgccgtttttggcaagatgtggtgcttctctcacatattactgtcttgctattctcccttctttttcacatatccattttgaaaataaaaatctatg 1412258  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttttgataaaactgctaactaacatcaagtaagggcattttgggattt 365  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||||||||    
T  1412257 tatgttataactgctgccaaggagttatatttttgtttttgataaaactgctaactattatcaagtaaaggcattttgggattt 1412174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 52520677 - 52520710
Alignment:
Q  418 taaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||||    
T  52520677 taaagggaaatgctaaccggtgcccccggggcac 52520710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 46352631 - 46352663
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||||    
T  46352631 aaagggaaatgctaaccggtgcccccggggcac 46352663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 272219 - 272249
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  272219 agggaaatgctaaccggtgcccccggggcac 272249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 49893330 - 49893360
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  49893330 agggaaatgctaaccggtgcccccggggcac 49893360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 15214900 - 15214940
Alignment:
Q  376 tacaccaaaaaattgtattgccttttattaataggtatagat 417  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  15214900 tacaccaaaaaattgtattgcc-tttattaataggtaaagat 15214940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 15254119 - 15254159
Alignment:
Q  376 tacaccaaaaaattgtattgccttttattaataggtatagat 417  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  15254119 tacaccaaaaaattgtattgcc-tttattaataggtaaagat 15254159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 39074419 - 39074448
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  39074419 gggaaatgctaaccggtgcccccggggcac 39074448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 18014669 - 18014701
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||| ||||||||||||||||    
T  18014669 aaagggaaatgctaactggtgcccccggggcac 18014701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 82 - 417
Target Start/End: Original strand, 35579161 - 35579496
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35579161 tgtgtagcctgatcgtaagcattaaaaaacattgagaaagaaacttactttggggacaatggaacggaaaaaagactaacaaagggtaatattgatccgt 35579260  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
     || ||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35579261 aactgccgtttttggcaagatgtggtgtttctctcacatattactgtcttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 35579360  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttttgataaaactgctaactaacatcaagtaagggcattttgggattt-nnnnnnnngctacac 380  Q
    ||||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||         |||||||    
T  35579361 tatgttataactactgccaaggagttatatttttgtttttgataaaactgctaactaacatcaaataagagcattttgggatttaaaaaaaaggctacac 35579460  T
Q  381 caaaaaattgtattgccttttattaataggtatagat 417  Q
    |||||||| |||||||| |||||||||||||||||||    
T  35579461 caaaaaatagtattgcc-tttattaataggtatagat 35579496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 789719 - 789687
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||||    
T  789719 aaagggaaatgctaaccggtgcccccggggcac 789687  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 15186240 - 15186272
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||||    
T  15186240 aaagggaaatgctaaccggtgcccccggggcac 15186272  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Original strand, 16536046 - 16536077
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  16536046 aagggaaatgctaaccggtgcccccggggcac 16536077  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 43202571 - 43202540
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  43202571 aagggaaatgctaaccggtgcccccggggcac 43202540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Complemental strand, 4269009 - 4268979
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  4269009 agggaaatgctaaccggtgcccccggggcac 4268979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Complemental strand, 18068066 - 18068036
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  18068066 agggaaatgctaaccggtgcccccggggcac 18068036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 54897308 - 54897337
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  54897308 gggaaatgctaaccggtgcccccggggcac 54897337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 29591186 - 29591218
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||| ||||||||||||||||    
T  29591186 aaagggaaatgctaactggtgcccccggggcac 29591218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 47232061 - 47232029
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||| ||||    
T  47232061 aaagggaaatgctaaccggtgcccccggagcac 47232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 82 - 320
Target Start/End: Complemental strand, 46120595 - 46120357
Alignment:
Q  82 tgtgtagcctgatcataagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaatggtaagattgatccgt 181  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  46120595 tgtgtagcctgatcgtaagcattaaaaaacatagagaaagaaacttagtttggggacaatggaacggaaaaaagactaacaaagggtaagactgatccgt 46120496  T
Q  182 taccgccgtttttggcaagatgtggtacttctctcacatattattgttttgctattctcccttctttttcacatatccattttgaaagtgaaaatctatg 281  Q
    ||| |||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46120495 tactgccgtttttggcaagatgtggtgcttctctcacatattactgtctcgctattctcccttctttttcacatatccattttgaaagtgaaaatatatg 46120396  T
Q  282 tatgttacaactgctaccaaggagttatattttagtttt 320  Q
    ||||||| ||||||| ||||||||||||||||| |||||    
T  46120395 tatgttataactgctgccaaggagttatatttttgtttt 46120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 419
Target Start/End: Complemental strand, 46119765 - 46119661
Alignment:
Q  316 gtttttgataaaactgctaactaacatcaagtaagggcattttgggattt--nnnnnnnngctacaccaaaaaattgtattgccttttattaataggtat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||||| |||||||| |||||||||||||||    
T  46119765 gtttttgataaaactgctaactaacatcaagtaagggcattttgggatttacaaaaaaatgttacaccaaaaaatagtattgcc-tttattaataggtat 46119667  T
Q  414 agatta 419  Q
    ||||||    
T  46119666 agatta 46119661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 28726094 - 28726063
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  28726094 aagggaaatgctaaccggtgcccccggggcac 28726063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Original strand, 29683193 - 29683224
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  29683193 aagggaaatgctaaccggtgcccccggggcac 29683224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 42770178 - 42770147
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  42770178 aagggaaatgctaaccggtgcccccggggcac 42770147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Complemental strand, 12072253 - 12072219
Alignment:
Q  417 ttaaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||| |||||||||||||||||||||||||||    
T  12072253 ttaaaggaaaatgctaaccggtgcccccggggcac 12072219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 13961211 - 13961241
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  13961211 agggaaatgctaaccggtgcccccggggcac 13961241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 29657770 - 29657800
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  29657770 agggaaatgctaaccggtgcccccggggcac 29657800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Complemental strand, 38595939 - 38595910
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  38595939 gggaaatgctaaccggtgcccccggggcac 38595910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 18043159 - 18043191
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||| |||||||||    
T  18043159 aaagggaaatgctaaccggtgcctccggggcac 18043191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 30657605 - 30657637
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||| ||||||||||    
T  30657605 aaagggaaatgctaaccggtgctcccggggcac 30657637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 32929699 - 32929666
Alignment:
Q  417 ttaaagggaaatgctaaccggtgcccccggggca 450  Q
    ||||||||||||||||||||||||||||||||||    
T  32929699 ttaaagggaaatgctaaccggtgcccccggggca 32929666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 3515761 - 3515795
Alignment:
Q  417 ttaaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||| ||||||    
T  3515761 ttaaagggaaatgctaaccggtgcccccagggcac 3515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 27433491 - 27433521
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  27433491 agggaaatgctaaccggtgcccccggggcac 27433521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 392096 - 392125
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  392096 gggaaatgctaaccggtgcccccggggcac 392125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 21686117 - 21686161
Alignment:
Q  374 gctacaccaaaaaattgtattgccttttattaataggtatagatta 419  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21686117 gctacaccaaaaaaaagtattgccttt-attaataggtatagatta 21686161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 34706716 - 34706749
Alignment:
Q  418 taaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||| |||||||    
T  34706716 taaagggaaatgctaaccggtgccccgggggcac 34706749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 12218624 - 12218593
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  12218624 aagggaaatgctaaccggtgcccccggggcac 12218593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Original strand, 18485959 - 18485990
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  18485959 aagggaaatgctaaccggtgcccccggggcac 18485990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Original strand, 34333282 - 34333313
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  34333282 aagggaaatgctaaccggtgcccccggggcac 34333313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 24438477 - 24438506
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  24438477 gggaaatgctaaccggtgcccccggggcac 24438506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 29993676 - 29993644
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||| ||||||||||||||||    
T  29993676 aaagggaaatgctaacgggtgcccccggggcac 29993644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 10054540 - 10054509
Alignment:
Q  420 aagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||||    
T  10054540 aagggaaatgctaaccggtgcccccggggcac 10054509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 13661803 - 13661837
Alignment:
Q  417 ttaaagggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||| ||||    
T  13661803 ttaaagggaaatgctaaccggtgcccccggagcac 13661837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Original strand, 10069969 - 10069998
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  10069969 gggaaatgctaaccggtgcccccggggcac 10069998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 451
Target Start/End: Complemental strand, 11958153 - 11958124
Alignment:
Q  422 gggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||||||||||    
T  11958153 gggaaatgctaaccggtgcccccggggcac 11958124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 35132518 - 35132547
Alignment:
Q  418 taaagggaaatgctaaccggtgcccccggg 447  Q
    ||||||||||||||||||||||||||||||    
T  35132518 taaagggaaatgctaaccggtgcccccggg 35132547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 21945050 - 21945018
Alignment:
Q  419 aaagggaaatgctaaccggtgcccccggggcac 451  Q
    ||||||||||||||||||||||| |||||||||    
T  21945050 aaagggaaatgctaaccggtgcctccggggcac 21945018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Complemental strand, 53872 - 53842
Alignment:
Q  421 agggaaatgctaaccggtgcccccggggcac 451  Q
    |||||||||||||||||||||||||||||||    
T  53872 agggaaatgctaaccggtgcccccggggcac 53842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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