View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_18 (Length: 443)
Name: NF2504_low_18
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 26 - 430
Target Start/End: Complemental strand, 2888021 - 2887616
Alignment:
| Q |
26 |
aaagttttataataatcctggttccgccaatgattcatatattaaaacattaagaataagagtagaaatacaattaagaggtatgtataaagatgagtta |
125 |
Q |
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| T |
2888021 |
aaagttttataataataatggttccgccactgattcatatattgaaacattaagaataagagtagaaatacaattaagaggtatgtataaagatgagtta |
2887922 |
T |
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| Q |
126 |
aattaaaatgtaaacgttttnnnnnnnnctatgaacgactattaatatgcctgcgaatacgagttagattgtagctatagcattatcatggagaagaact |
225 |
Q |
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| T |
2887921 |
aattaaaatgtaaacgttttaaaaaaa-ctatgaacgactattaatatgcctgcgaatacgagttagattgtagctatagcattatcatggagaaaaact |
2887823 |
T |
|
| Q |
226 |
ctacgataagagagaataactcttaatttgttcttctaatgagaaacattaagcacaccattaacgatgatttgacgaacactctcaaaggagatattct |
325 |
Q |
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| T |
2887822 |
ctacgataagagagaataactcttaatttgttcttctaatgagaaacattaagcacaccattaacgatgatttgacgaacactctcaaaggagatattct |
2887723 |
T |
|
| Q |
326 |
ctaattagtccatgagatactctcgtttgctaggagataaggagggaaattgcttcactttcagatttgcatttcctgcacttgcaaat--taggaccat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||| ||||||||| |
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| T |
2887722 |
ctaattagtccatgagatactctcgtttgctaggagataaggagggcaattgcttcactttcagatttgaatttcctgcggttacaaattataggaccat |
2887623 |
T |
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| Q |
424 |
ccaattt |
430 |
Q |
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| T |
2887622 |
ccgattt |
2887616 |
T |
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