View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_2 (Length: 632)

Name: NF2504_low_2
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_2
NF2504_low_2
[»] chr4 (21 HSPs)
chr4 (18-622)||(31758484-31759090)
chr4 (270-443)||(21433860-21434035)
chr4 (292-448)||(2247589-2247744)
chr4 (335-450)||(2324728-2324845)
chr4 (256-393)||(16457949-16458085)
chr4 (308-419)||(33414006-33414117)
chr4 (258-411)||(41840568-41840720)
chr4 (292-432)||(15134555-15134697)
chr4 (258-419)||(3688573-3688735)
chr4 (290-445)||(52374892-52375049)
chr4 (261-388)||(32286266-32286392)
chr4 (297-413)||(38036246-38036360)
chr4 (258-325)||(15134542-15134609)
chr4 (335-398)||(17181271-17181334)
chr4 (362-433)||(21433860-21433933)
chr4 (292-393)||(9023939-9024040)
chr4 (341-393)||(993246-993298)
chr4 (376-448)||(15134660-15134734)
chr4 (353-420)||(19382299-19382366)
chr4 (352-419)||(42516514-42516581)
chr4 (288-325)||(38036242-38036279)
[»] chr5 (18 HSPs)
chr5 (257-420)||(3907630-3907793)
chr5 (262-420)||(25545199-25545355)
chr5 (256-407)||(41169405-41169556)
chr5 (255-413)||(33029466-33029624)
chr5 (258-432)||(36059184-36059358)
chr5 (292-445)||(42419992-42420147)
chr5 (262-393)||(22399749-22399880)
chr5 (293-432)||(27195262-27195402)
chr5 (258-366)||(40927662-40927770)
chr5 (291-415)||(33029501-33029625)
chr5 (270-369)||(12504593-12504692)
chr5 (306-369)||(36945658-36945721)
chr5 (255-325)||(35244917-35244987)
chr5 (343-397)||(43461986-43462040)
chr5 (321-433)||(38029530-38029641)
chr5 (286-369)||(32051520-32051601)
chr5 (304-364)||(36005040-36005100)
chr5 (317-369)||(40530026-40530078)
[»] chr2 (26 HSPs)
chr2 (258-419)||(16209378-16209539)
chr2 (298-445)||(18719708-18719854)
chr2 (255-432)||(12703460-12703639)
chr2 (304-448)||(3466408-3466554)
chr2 (262-369)||(12779481-12779587)
chr2 (290-432)||(25666805-25666949)
chr2 (274-393)||(1469730-1469849)
chr2 (292-419)||(42251166-42251293)
chr2 (317-432)||(42094237-42094353)
chr2 (296-393)||(44247567-44247664)
chr2 (292-420)||(37810155-37810283)
chr2 (286-429)||(39090369-39090512)
chr2 (290-421)||(45300374-45300505)
chr2 (337-419)||(1930673-1930755)
chr2 (303-389)||(4237270-4237356)
chr2 (360-418)||(8090921-8090979)
chr2 (255-313)||(25666907-25666965)
chr2 (261-393)||(36283464-36283592)
chr2 (376-429)||(1469730-1469785)
chr2 (352-432)||(6978958-6979038)
chr2 (376-441)||(9430230-9430297)
chr2 (312-419)||(2683405-2683512)
chr2 (292-370)||(29160850-29160928)
chr2 (255-368)||(9430191-9430304)
chr2 (292-413)||(33069176-33069297)
chr2 (255-324)||(35715071-35715140)
[»] chr1 (21 HSPs)
chr1 (256-393)||(731303-731440)
chr1 (257-432)||(7444269-7444446)
chr1 (290-409)||(2542709-2542828)
chr1 (305-397)||(23317934-23318026)
chr1 (292-418)||(45215332-45215457)
chr1 (290-432)||(38663639-38663783)
chr1 (261-393)||(49403501-49403633)
chr1 (339-430)||(40374093-40374183)
chr1 (290-419)||(31970127-31970256)
chr1 (258-393)||(939363-939498)
chr1 (258-420)||(40668931-40669091)
chr1 (377-432)||(40669023-40669078)
chr1 (292-370)||(45563118-45563196)
chr1 (289-332)||(45925198-45925241)
chr1 (259-348)||(51810679-51810765)
chr1 (292-389)||(23412798-23412895)
chr1 (290-432)||(34437605-34437748)
chr1 (257-325)||(7444255-7444323)
chr1 (304-419)||(5695681-5695793)
chr1 (258-369)||(27666968-27667079)
chr1 (262-325)||(38663630-38663693)
[»] chr3 (23 HSPs)
chr3 (258-389)||(14345126-14345257)
chr3 (255-393)||(35357289-35357427)
chr3 (258-432)||(36480682-36480858)
chr3 (340-448)||(37341200-37341305)
chr3 (288-445)||(3901504-3901656)
chr3 (317-432)||(36007389-36007506)
chr3 (312-421)||(40763397-40763506)
chr3 (290-445)||(19560604-19560761)
chr3 (292-432)||(40554029-40554168)
chr3 (292-393)||(19158688-19158788)
chr3 (296-442)||(31205347-31205495)
chr3 (288-325)||(49750607-49750644)
chr3 (290-447)||(32880970-32881129)
chr3 (292-415)||(29955045-29955168)
chr3 (292-415)||(30004199-30004322)
chr3 (258-393)||(51541220-51541355)
chr3 (292-413)||(3901508-3901623)
chr3 (265-370)||(37189196-37189301)
chr3 (289-334)||(55196240-55196285)
chr3 (335-419)||(11532487-11532571)
chr3 (296-368)||(45332557-45332629)
chr3 (258-321)||(26986373-26986436)
chr3 (376-446)||(36480681-36480753)
[»] chr6 (15 HSPs)
chr6 (258-445)||(12731529-12731718)
chr6 (259-346)||(24110039-24110126)
chr6 (257-370)||(5706670-5706784)
chr6 (340-449)||(1473586-1473697)
chr6 (259-365)||(7303455-7303560)
chr6 (262-343)||(1473594-1473675)
chr6 (292-432)||(34093802-34093942)
chr6 (290-366)||(4494401-4494477)
chr6 (290-370)||(24783918-24783998)
chr6 (335-393)||(6643367-6643425)
chr6 (290-432)||(4032994-4033143)
chr6 (290-393)||(11650918-11651022)
chr6 (379-433)||(10729959-10730013)
chr6 (336-397)||(3150234-3150295)
chr6 (258-325)||(10729960-10730025)
[»] chr8 (21 HSPs)
chr8 (292-419)||(40175902-40176030)
chr8 (256-393)||(4994184-4994319)
chr8 (292-370)||(35586455-35586533)
chr8 (259-419)||(40694589-40694749)
chr8 (256-419)||(2288602-2288765)
chr8 (286-417)||(34504380-34504511)
chr8 (335-428)||(42072654-42072747)
chr8 (256-445)||(8402455-8402640)
chr8 (288-419)||(38835003-38835136)
chr8 (259-389)||(40696221-40696351)
chr8 (286-415)||(21124954-21125082)
chr8 (297-393)||(26018476-26018570)
chr8 (292-369)||(27072868-27072945)
chr8 (362-419)||(35586482-35586539)
chr8 (257-330)||(23848240-23848311)
chr8 (403-441)||(23848245-23848283)
chr8 (267-397)||(36914874-36915003)
chr8 (292-325)||(13772490-13772523)
chr8 (265-370)||(17893299-17893404)
chr8 (289-386)||(30262764-30262861)
chr8 (293-325)||(38835010-38835042)
[»] chr7 (22 HSPs)
chr7 (297-445)||(26862927-26863077)
chr7 (292-371)||(45200501-45200580)
chr7 (296-419)||(49106919-49107041)
chr7 (292-397)||(2276286-2276391)
chr7 (258-420)||(3235534-3235696)
chr7 (317-431)||(316393-316509)
chr7 (292-445)||(10056632-10056787)
chr7 (257-419)||(12275714-12275874)
chr7 (308-393)||(24516585-24516670)
chr7 (328-432)||(47497745-47497851)
chr7 (330-419)||(11201296-11201385)
chr7 (290-419)||(26647698-26647826)
chr7 (312-432)||(18802830-18802950)
chr7 (256-315)||(316466-316525)
chr7 (292-432)||(5443539-5443680)
chr7 (337-419)||(7017140-7017222)
chr7 (337-419)||(7032498-7032580)
chr7 (300-369)||(640932-641001)
chr7 (271-420)||(46074043-46074192)
chr7 (288-371)||(2417151-2417232)
chr7 (376-432)||(12275728-12275784)
chr7 (337-393)||(40134440-40134496)
[»] scaffold0009 (1 HSPs)
scaffold0009 (255-325)||(39193-39262)
[»] scaffold0003 (1 HSPs)
scaffold0003 (306-429)||(136344-136469)
[»] scaffold0620 (1 HSPs)
scaffold0620 (292-432)||(9136-9276)
[»] scaffold0137 (1 HSPs)
scaffold0137 (354-445)||(8251-8343)
[»] scaffold0015 (1 HSPs)
scaffold0015 (288-445)||(200963-201121)


Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 622
Target Start/End: Complemental strand, 31759090 - 31758484
Alignment:
Q  18 aagattctgtatttgctattatatcctagcatgcagagcaacttgataaataatcagaacttagttgaaaggaggaaaatggtatcttctatgtagcaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31759090 aagattctgtatttgctattatatcctagcatgcagagcaacttgataaataatcagaacttagttgaaaggaggaaaatggtatcttctatgtagcaac 31758991  T
Q  118 atgcaaagaggttttgcaaatttgtgacattgaagttgttagactaacgtatatgtttttcttgttcttattattaaaatctcattgccgatgtgaaatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31758990 atgcaaagaggttttgcaaatttgtgacattgaagttgttagactaacgtatatgtttttcttgttcttattattaaa-tctcattgccgatgtgaaatt 31758892  T
Q  218 aatacacaacgcaacatataagcttcaaataaaattctaagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31758891 aatacacaacgcaacatataagcttcaaataaaattctaagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgat 31758792  T
Q  318 taaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgt 417  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  31758791 taaaattcttatgagacccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaatcaaatagaatgtgttgaaaagtgt 31758692  T
Q  418 gttaaaatgtgtgtttttaccattcctcaaattctaattgttttctaaattggtttcacata---tatcattcattttcttttctttattggtttcacag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||    
T  31758691 gttaaaatgtgtgtttttaccattcctcaaattctaattgttttctaaattggtttcacatatactatcattcattttcttttttttattggtttcacag 31758592  T
Q  515 attcatttttctaattaatactgttgggttgggctttcttctctttctatacattgggctgagtctcactcataccaacttcatgagcttttatccccac 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31758591 attcatttttctaattaatactgttgggttgggctttcttctctttctatacattgggctgagtttcactcataccaacttcatgagcttttatccccac 31758492  T
Q  615 ctcctatg 622  Q
    ||||||||    
T  31758491 ctcctatg 31758484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 270 - 443
Target Start/End: Original strand, 21433860 - 21434035
Alignment:
Q  270 aaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    ||||||||||||||  | | ||||||||||||| |||||||||||| |||||||||  |||||| |||||||||||| ||||||||||||||||||||||    
T  21433860 aaacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtg 21433959  T
Q  370 gagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtg--tgttaaaatgtgtgtttttaccattcc 443  Q
    |     |||||||||||||||||| ||   || ||||||||||||||  ||||||||||||||||  |||||||||    
T  21433960 ggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgttgctaccattcc 21434035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 292 - 448
Target Start/End: Original strand, 2247589 - 2247744
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| ||||||| ||||||||||||||  | ||||||||| ||||||| ||| |||||||||||||||||||     |||| |||||||||||    
T  2247589 ttttcaacacactctctttaattgattaaaattcacacgagatccac-aaatttatatgcgacccacatgatttggtgggatccatgttaattttaacca 2247687  T
Q  392 attaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctcaaa 448  Q
    || |||  || || |||| |||||||||||||||||||||| ||| |||||||||||    
T  2247688 atcaaagagagtgggttggaaagtgtgttaaaatgtgtgttgttagcattcctcaaa 2247744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 335 - 450
Target Start/End: Complemental strand, 2324845 - 2324728
Alignment:
Q  335 ccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgt--gttaaaatgtgtgtt 432  Q
    |||||||||||| ||| |||||||||||||||||| | || |||||||||||||||||| |||  || | | |||||||||||  |||||||||||||||    
T  2324845 ccaccaaatttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtgcgttaaaatgtgtgtt 2324746  T
Q  433 tttaccattcctcaaatt 450  Q
     ||| |||||||| ||||    
T  2324745 gttatcattcctctaatt 2324728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 256 - 393
Target Start/End: Complemental strand, 16458085 - 16457949
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacc 355  Q
    |||||||||||||| |||||||||| ||  | | | ||||||||||| |||||||||| ||||||| ||| | ||||| |||||||||||| ||| ||||    
T  16458085 aagagaaatgctagcaacacacattctaacacacacttttcaacacactctctttgatcgattaaa-ttcatgtgagacccaccaaatttatatgggacc 16457987  T
Q  356 cacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    ||||||||||| |||     ||||||||||||||||||    
T  16457986 cacatgatttgatgggatccatgtgaattttaaccaat 16457949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 33414117 - 33414006
Alignment:
Q  308 tttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgt 407  Q
    |||||||||||||||||| |||| || |||||||||||| ||  ||||||| |||||||||||     |||||||||||||||||| |||  || |||||    
T  33414117 tttgattgattaaaattcatatgggacccaccaaatttatataggacccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgt 33414018  T
Q  408 tgaaaagtgtgt 419  Q
    ||||||||||||    
T  33414017 tgaaaagtgtgt 33414006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 258 - 411
Target Start/End: Original strand, 41840568 - 41840720
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||| ||| |||| ||||||||  | ||||||||||||||| |||||||||||||||||||||   ||| | ||||||||||||| |||  |  |     
T  41840568 gagaaatgttagcaacatacattttaacacatatttttcaacacactctctttgattgattaaaatttacatgggttccaccaaatttatatgtca-tcg 41840666  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaa 411  Q
    | | |||| ||||| || |||||||||||||||||| |||| || |||||||||    
T  41840667 cttaatttagtggaactcatgtgaattttaaccaatcaaatagagtgtgttgaa 41840720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 15134697 - 15134555
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| | ||| |||||| |||||||||  ||| ||  ||||||||||| ||| |||||| ||||||| || |  |  ||||||||||||||||    
T  15134697 ttttcaacacactgtctgtgattggttaaaattcacatgggactcaccaaatttatatgggacccaaatgatttagtcggacccatgtgaattttaacca 15134598  T
Q  392 attaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
    || |||  ||||||||||||||  |||||||||||| ||||||    
T  15134597 ataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgtt 15134555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 419
Target Start/End: Complemental strand, 3688735 - 3688573
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatcca-ccaaatttacatgagaccc 356  Q
    |||||||||||  ||||||||||||| |||| | ||| ||||||| | |||||||||| |||||||||  ||| || ||| | ||| ||| ||| |||||    
T  3688735 gagaaatgctaacaacacacattttaatatacactttccaacacactttctttgattggttaaaattcacatgtgacccatctaaaattatatgggaccc 3688636  T
Q  357 acatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||||||||   |  |||||||||||||| ||| |||   ||||||||||||| |||||    
T  3688635 acatgatttggtgagacccatgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgt 3688573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 445
Target Start/End: Complemental strand, 52375049 - 52374892
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagctt-atgtgaattttaa 388  Q
    ||||||||| ||| ||| |||||||| |||||||||  ||  |||||| |||||||| | | ||||||||| |||||||| || |  |||||||||||||    
T  52375049 atttttcaatacactctttttgattggttaaaattcacatttgatccatcaaatttatacgggacccacataatttggtg-agatccatgtgaattttaa 52374951  T
Q  389 ccaattaaatcgaatgtgttgaaaagtgtgt--taaaatgtgtgtttttaccattcctc 445  Q
     | || |||  || |||||||||||||||||  ||||||||||||| ||| ||||||||    
T  52374950 tctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctc 52374892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 388
Target Start/End: Complemental strand, 32286392 - 32286266
Alignment:
Q  261 aaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatcc-accaaatttacatgagacccaca 359  Q
    ||||||||| ||||||| ||| |  ||||||||||||||||| ||| ||| |||| |||||||||  ||| ||||| |||||||||| ||  || |||||    
T  32286392 aaatgctagcaacacacgtttcaacatatatttttcaacacactcttttttattggttaaaattcacatg-gatccaaccaaatttatat-tgatccaca 32286295  T
Q  360 tgatttggtggagcttatgtgaattttaa 388  Q
    |||||||||||  || |||||||||||||    
T  32286294 tgatttggtgggactcatgtgaattttaa 32286266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 413
Target Start/End: Complemental strand, 38036360 - 38036246
Alignment:
Q  297 aacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaa 396  Q
    |||||||| |||||||||  |||||||||  |||||| ||| |||||||| |||  |||||||| |||||| ||| || |||||||||||||||||| ||    
T  38036360 aacacattgtctttgatttgttaaaattcacatgagacccaacaaatttatatggaacccacataatttgg-gga-ctcatgtgaattttaaccaatcaa 38036263  T
Q  397 atcgaatgtgttgaaaa 413  Q
    |   |||||||||||||    
T  38036262 agaaaatgtgttgaaaa 38036246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 15134542 - 15134609
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattc 325  Q
    |||||||||||| |||||| ||||||  | | ||||||||||||||||||||| |||| |||||||||    
T  15134542 gagaaatgctagtaacacaaattttaacacacatttttcaacacattctcttttattggttaaaattc 15134609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 17181271 - 17181334
Alignment:
Q  335 ccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaat 398  Q
    |||||||||||| ||||||||||| |||||||||||  | ||||||||||||||| ||| ||||    
T  17181271 ccaccaaatttatatgagacccacgtgatttggtgggacctatgtgaattttaactaatcaaat 17181334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 433
Target Start/End: Complemental strand, 21433933 - 21433860
Alignment:
Q  362 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgttt 433  Q
    |||||||||  || |||||||||||||||||| |||  || |||||||||||  ||||||||||||||||||||    
T  21433933 atttggtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtgttt 21433860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 9024040 - 9023939
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    |||||||||||||||||||||||  ||||||||   ||| || ||||  |||||| ||| ||| ||||||||||| |||  || |||||||||||| |||    
T  9024040 ttttcaacacattctctttgatttgttaaaatttacatgggacccactcaatttatatgggactcacatgatttgttgggactcatgtgaattttaccca 9023941  T
Q  392 at 393  Q
    ||    
T  9023940 at 9023939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 993298 - 993246
Alignment:
Q  341 aatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    |||| ||||| |||||||||||||||||||  || ||||||||||||||||||    
T  993298 aattcacatgggacccacatgatttggtgggactcatgtgaattttaaccaat 993246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 448
Target Start/End: Original strand, 15134660 - 15134734
Alignment:
Q  376 atgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtg--ttaaaatgtgtgtttttaccattcctcaaa 448  Q
    |||||||||||||||||| | |   | ||||||||||||||||  |||||||||||||| ||| |||||||||||    
T  15134660 atgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgtgttgttagcattcctcaaa 15134734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 19382366 - 19382299
Alignment:
Q  353 acccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtt 420  Q
    ||||||||||||||||||     |||||||||||||||||| |||| || ||||||| ||||||||||    
T  19382366 acccacatgatttggtgggatccatgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgtt 19382299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 42516514 - 42516581
Alignment:
Q  352 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||||| ||| |||   ||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  42516514 gacccacatggtttagtgtgacttatgtgaatttaaaccaaataaagagaatgtgttgaaaagtgtgt 42516581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 38036242 - 38036279
Alignment:
Q  288 atatttttcaacacattctctttgattgattaaaattc 325  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  38036242 atatttttcaacacattttctttgattggttaaaattc 38036279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 257 - 420
Target Start/End: Original strand, 3907630 - 3907793
Alignment:
Q  257 agagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccc 356  Q
    ||||||||||||| |||||||||| ||  | | | |||||||||||  ||||||||||| |||||||||  ||| || |||||||||||| ||| |||||    
T  3907630 agagaaatgctagcaacacacattctaacaaacacttttcaacaca--ctctttgattggttaaaattcacatgggacccaccaaatttatatgggaccc 3907727  T
Q  357 acatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttg--aaaagtgtgtt 420  Q
    ||||||||||||||  |  |||||||||||||||||| |||  ||||||||||  |||||||||||    
T  3907728 acatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgtt 3907793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 262 - 420
Target Start/End: Original strand, 25545199 - 25545355
Alignment:
Q  262 aatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatg 361  Q
    |||||||| || ||||||||||  | | |||||||||||||  ||||||||||| |||||||||  |||||| |||| ||||||| ||| |||| |||||    
T  25545199 aatgctagcaatacacattttaacacacatttttcaacaca--ctctttgattggttaaaattcacatgagacccactaaatttatatgggaccgacatg 25545296  T
Q  362 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtt 420  Q
    |||||||||  || | |||||||||||||||| |||  || |||||| ||| |||||||    
T  25545297 atttggtgggactcacgtgaattttaaccaatcaaagagagtgtgttaaaatgtgtgtt 25545355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 407
Target Start/End: Complemental strand, 41169556 - 41169405
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacc 355  Q
    |||||||||||||| |||||| ||||||  | | ||||||||||||| ||||||||||   |||||||||  ||| ||||||||||||||| ||| |||     
T  41169556 aagagaaatgctagtaacacatattttaacacacatttttcaacacactctctttgatccgttaaaattcacatgtgatccaccaaatttatatgggact 41169457  T
Q  356 cacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgt 407  Q
    | ||||||||||||||    |||||||||| ||||||| |||| || |||||    
T  41169456 cgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 41169405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 255 - 413
Target Start/End: Original strand, 33029466 - 33029624
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagac 354  Q
    ||||||||||||||| |||||| ||||||  ||||| ||||||||||||||||||| |||  ||||||||| ||| ||  |||||||||||| ||||| |    
T  33029466 taagagaaatgctagcaacacatattttaacatatacttttcaacacattctctttaattagttaaaattcatataagtcccaccaaatttatatgagtc 33029565  T
Q  355 ccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa 413  Q
     ||  | |||||||||  || |||||| |||||||| || |||  || |||||||||||    
T  33029566 acatctaatttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttgaaaa 33029624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 258 - 432
Target Start/End: Original strand, 36059184 - 36059358
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||| |||||| ||||||  | ||| |||| |||| | ||||||||||||||||| ||||  |||||| ||| |||||||| ||||||||||    
T  36059184 gagaaatgctagcaacacatatttta--acataatttttaacagaatctctttgattgattaagattcacatgagacccatcaaatttatatgagaccca 36059281  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaag--tgtgttaaaatgtgtgtt 432  Q
    ||||||||| |||     |||| ||||||||||||| ||||  | ||||||| ||||  ||||||| ||||||||||    
T  36059282 catgatttgatgggatccatgtaaattttaaccaatcaaataaagtgtgttggaaagtatgtgttagaatgtgtgtt 36059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 445
Target Start/End: Complemental strand, 42420147 - 42419992
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| ||| |||||||| |||||| ||  |||||||||| |||||||| ||| || ||||||||||||||||  |  | ||   |||||||||    
T  42420147 ttttcaacacactctatttgattggttaaaactcacatgagatccatcaaatttatatgggatccacatgatttggtgggacccacgtatgttttaacca 42420048  T
Q  392 attaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctc 445  Q
    ||||||  ||||||||||||||  |||||||| |||| ||||| ||| ||||||||    
T  42420047 attaaagagaatgtgttgaaaaatgtgtgttagaatgagtgttgttagcattcctc 42419992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 262 - 393
Target Start/End: Original strand, 22399749 - 22399880
Alignment:
Q  262 aatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatg 361  Q
    |||||||| |||||||||| || ||   | ||||||||||| ||| ||||||||  ||||||||  |||||| |||||||||| | |||||||||| |||    
T  22399749 aatgctagcaacacacattctaatactcacttttcaacacactctttttgattggataaaattcacatgagacccaccaaattcatatgagacccagatg 22399848  T
Q  362 atttggtggagcttatgtgaattttaaccaat 393  Q
    |||| || |  || ||||||||||||||||||    
T  22399849 atttagtaggactcatgtgaattttaaccaat 22399880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 432
Target Start/End: Original strand, 27195262 - 27195402
Alignment:
Q  293 tttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaa 392  Q
    |||||||||| ||| ||| ||||||||||||||  |||   ||||||||||||| ||| | || ||||||||| ||||  || ||||||||||||| |||    
T  27195262 tttcaacacactctttttaattgattaaaattcacatggattccaccaaatttatatgggtccgacatgattttgtgggactcatgtgaattttaatcaa 27195361  T
Q  393 ttaaatcgaatgtgttgaaa-agtgtgttaaaatgtgtgtt 432  Q
    | |||  || ||  ||||||  |||||||||||||||||||    
T  27195362 tcaaagagagtgcattgaaagtgtgtgttaaaatgtgtgtt 27195402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 40927770 - 40927662
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||| |||||||||| ||  | | ||||||||||| | | |||||||||| | |||||||  ||| || ||||||| ||||||||  |||||    
T  40927770 gagaaatgctagcaacacacattataacacaaatttttcaacaaactatctttgattggtcaaaattcacatgggacccaccaattttacatggaaccca 40927671  T
Q  358 catgatttg 366  Q
    |||||||||    
T  40927670 catgatttg 40927662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 415
Target Start/End: Complemental strand, 33029625 - 33029501
Alignment:
Q  291 tttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatga-tttggtggagcttatgtgaattttaac 389  Q
    |||||||||||| |||||||||| | |||||| ||  |||||  |||||||||| | ||| ||| || || | ||||||||  ||||| |||||||||||    
T  33029625 tttttcaacacactctctttgatcggttaaaactcacatgagtcccaccaaatt-agatgtgactcatataaatttggtgggacttatatgaattttaac 33029527  T
Q  390 caattaaatcgaatgtgttgaaaagt 415  Q
     |||||||  ||||||||||||||||    
T  33029526 taattaaagagaatgtgttgaaaagt 33029501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 12504593 - 12504692
Alignment:
Q  270 aaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    |||||||||||| | || |||||||||||| || | || || ||||||||||||||  ||||  |||| |||||||| ||| |||| |||| ||||||||    
T  12504593 aaacacacatttcaatacatatttttcaacgcactatcattaattgattaaaattcacatgaattccaacaaatttatatgggaccaacataatttggtg 12504692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 369
Target Start/End: Complemental strand, 36945721 - 36945658
Alignment:
Q  306 tctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    |||||||||| |||| ||||  |||| |||||||||||||| |||||||| | |||||||||||    
T  36945721 tctttgattggttaatattcacatgaaatccaccaaatttatatgagacctatatgatttggtg 36945658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 35244987 - 35244917
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattc 325  Q
    ||||||||||||||| |||||||||||||  ||| | || |||||||| | |||||||||| || ||||||    
T  35244987 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattc 35244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 43462040 - 43461986
Alignment:
Q  343 tttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaa 397  Q
    |||| ||||||||||| |||||||||||| ||  |||||||||||||| ||||||    
T  43462040 tttatatgagacccacgtgatttggtggaactcgtgtgaattttaaccgattaaa 43461986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 433
Target Start/End: Complemental strand, 38029641 - 38029530
Alignment:
Q  321 aattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttg--aaaagtgtg 418  Q
    ||||| ||||| | ||||| |||||| |||||| |||||||||||||||   |  |||||||||||||||||| |||   | |||||||  ||| |||||    
T  38029641 aattcatatgaaacccacccaatttatatgagatccacatgatttggtgagacccatgtgaattttaaccaatcaaa---agtgtgttggaaaatgtgtg 38029545  T
Q  419 ttaaaatgtgtgttt 433  Q
    ||| |||||||||||    
T  38029544 ttagaatgtgtgttt 38029530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 32051601 - 32051520
Alignment:
Q  286 atatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    ||||||||||||| | | | ||||| |||| ||||||||||||| |   |||||||||||  |||||| |||||||||||||||    
T  32051601 atatatttttcaaaatactatcttttattggttaaaattcttataactcccaccaaattt--atgagatccacatgatttggtg 32051520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 36005040 - 36005100
Alignment:
Q  304 tctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatt 364  Q
    ||||||| | |||||||||||| |||| ||||||||||||||| ||| || |||| |||||    
T  36005040 tctctttaagtgattaaaattcatatgggatccaccaaatttatatgggatccacgtgatt 36005100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 40530078 - 40530026
Alignment:
Q  317 ttaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    |||||||||  | ||||||||| ||||||| || |||||||||||||||||||    
T  40530078 ttaaaattcacaggagatccactaaatttatattagacccacatgatttggtg 40530026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 258 - 419
Target Start/End: Complemental strand, 16209539 - 16209378
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||| |||||| ||| ||  ||| | |||||||| |||||||||||||   |||||||||  |||| | |||||||||||| ||| |||| |    
T  16209539 gagaaatgctagcaacacatattctaacatacacttttcaacgcattctctttgatcagttaaaattcaaatgaaacccaccaaatttatatgggaccga 16209440  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    ||  |||||||||| || ||||||||||||||||||||||  || ||||||| |||||||||    
T  16209439 caaaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgt 16209378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 298 - 445
Target Start/End: Complemental strand, 18719854 - 18719708
Alignment:
Q  298 acacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaa 397  Q
    ||||| |||||||||||| ||||| ||   |||||| ||| |||||||| ||| |||||||||||||||||||| ||  ||||||||||||||||| |||    
T  18719854 acacactctctttgattggttaaatttac-atgagacccatcaaatttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaa 18719756  T
Q  398 tcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttaccattcctc 445  Q
      || ||||||||||| ||||||| ||||||||||  || ||||||||    
T  18719755 aagagtgtgttgaaaaatgtgttagaatgtgtgttgctagcattcctc 18719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 255 - 432
Target Start/End: Complemental strand, 12703639 - 12703460
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagac 354  Q
    ||||||||||||||| |||| | |||||| |||| ||||||||||||||| |||||||||  ||||||||| |  |||| |||| | ||||| |||  |     
T  12703639 taagagaaatgctagtaacatatattttaatatacatttttcaacacattttctttgattagttaaaattcattagagacccactatatttatatggaat 12703540  T
Q  355 ccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
     || |||||||| |||| || |||||||| ||||||||| |||   | ||| |||||||  |||||||||||||||||||    
T  12703539 tcagatgatttgatggaactcatgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgttaaaatgtgtgtt 12703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 448
Target Start/End: Original strand, 3466408 - 3466554
Alignment:
Q  304 tctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaat 403  Q
    |||||||||||| |||||||||  |||||| |||||||||| | ||| |||||||| ||||| ||||| |  |||||||||||||||||| |||  || |    
T  3466408 tctctttgattggttaaaattcacatgagacccaccaaattcatatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagagact 3466507  T
Q  404 gtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctcaaa 448  Q
     ||||  |||  |||||||||||||||||||  || |||||||||||    
T  3466508 atgtttgaaagtgtgtgttaaaatgtgtgttgctagcattcctcaaa 3466554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 262 - 369
Target Start/End: Original strand, 12779481 - 12779587
Alignment:
Q  262 aatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatg 361  Q
    |||||||| ||||||| || ||  ||| ||||||||||||||||| |||||||| |||||||||  ||| ||||||||||||| | ||| ||||||||||    
T  12779481 aatgctagcaacacaccttctaacatacatttttcaacacattct-tttgattggttaaaattcacatgggatccaccaaattcatatgtgacccacatg 12779579  T
Q  362 atttggtg 369  Q
    ||||||||    
T  12779580 atttggtg 12779587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 432
Target Start/End: Original strand, 25666805 - 25666949
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||| ||| ||||||||||||||||||  |||||| |||||||||||| |||  ||| ||||||||||||||     ||||| ||||||||    
T  25666805 atttttcaacacactctatttgattgattaaaattcacatgagacccaccaaatttatatggaacctacatgatttggtgggatccatgtggattttaac 25666904  T
Q  390 caattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
      || |||  || |||||||||||  || ||||||||||||||||    
T  25666905 acatcaaagagagtgtgttgaaaattgtatgttaaaatgtgtgtt 25666949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 1469730 - 1469849
Alignment:
Q  274 acacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagc 373  Q
    ||||||||||  | ||||||||||||||| ||| ||| |||| |||||||||  |||  |||||||||||||| ||| |||||||||||||| ||||       
T  1469730 acacattttaacacatatttttcaacacactctatttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgattttgtgggat 1469829  T
Q  374 ttatgtgaattttaaccaat 393  Q
      ||||||||||||||||||    
T  1469830 ccatgtgaattttaaccaat 1469849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 419
Target Start/End: Complemental strand, 42251293 - 42251166
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||  | ||||||| |||||||||  |  ||| |||||||||||     
T  42251293 ttttcaacacactctctttgattgattaaaattcacatgggatccaccaaatttatataggtcccacataatttggtgggacccatgcgaattttaaccg 42251194  T
Q  392 attaaatcgaatgtgttgaaaagtgtgt 419  Q
    || |||  || ||||| ||||| |||||    
T  42251193 atcaaagagagtgtgtcgaaaaatgtgt 42251166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 432
Target Start/End: Original strand, 42094237 - 42094353
Alignment:
Q  317 ttaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--g 414  Q
    |||||||||  ||| || |||||||||||| ||| ||||||||||||||||||| |   |||||||||||||||||| |||  |  |||||||||||  |    
T  42094237 ttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgg-gaccatgtgaattttaaccaatcaaagagtgtgtgttgaaaagtg 42094335  T
Q  415 tgtgttaaaatgtgtgtt 432  Q
    ||||||||||||||||||    
T  42094336 tgtgttaaaatgtgtgtt 42094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 44247664 - 44247567
Alignment:
Q  296 caacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    ||||||| |||||||||||| |||||||||  ||| |||||| |||||||  ||| ||||||||| |||||||||| |  |||||||||| |||||||    
T  44247664 caacacactctctttgattggttaaaattcacatgggatccatcaaatttgtatgggacccacataatttggtggaacccatgtgaatttcaaccaat 44247567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 420
Target Start/End: Original strand, 37810155 - 37810283
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| |||||||||||| ||| |||||  ||| || |||||||||||| ||| ||||||  | |||||||||  |  ||||||||||||||||    
T  37810155 ttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaattttaacca 37810254  T
Q  392 attaaatcgaatgtgttgaaaagtgtgtt 420  Q
    || |||  || |||| || ||||||||||    
T  37810255 atcaaagtgagtgtgatggaaagtgtgtt 37810283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 286 - 429
Target Start/End: Complemental strand, 39090512 - 39090369
Alignment:
Q  286 atatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattt 385  Q
    |||||||||| |||| ||||| |||||||| ||||||||| |||| |   || ||| |||| ||  || ||||||||||||||||| || || | |||||    
T  39090512 atatattttttaacatattctttttgattggttaaaattcatatgggt--catcaattttatatatgatccacatgatttggtggaactcatataaattt 39090415  T
Q  386 taaccaattaaatcgaatgtgttgaaaag--tgtgttaaaatgtgt 429  Q
    ||| |||| |||| || ||||||||||||  || ||||||||||||    
T  39090414 taagcaataaaatagattgtgttgaaaagtatgggttaaaatgtgt 39090369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 421
Target Start/End: Original strand, 45300374 - 45300505
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||| ||  |||||||| ||||||| | |||| || |||| |||| || ||| |||||| || ||||| ||||    ||||||||||||||    
T  45300374 atttttcaacacactccttttgattggttaaaatacatatgggacccactaaatctatatgggacccatataatttgatggaatccatgtgaattttaac 45300473  T
Q  390 caattaaatcgaatgtgttgaaaagtgtgtta 421  Q
    |||| |||  || ||| |||||||||||||||    
T  45300474 caatcaaaaagagtgtattgaaaagtgtgtta 45300505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 1930755 - 1930673
Alignment:
Q  337 accaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||||| ||| ||||||||| ||||| |||| | ||||||||||||||||||| |||  || ||| ||||||| |||||    
T  1930755 accaaatttatatgggacccacataatttgatggaacatatgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgt 1930673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 4237270 - 4237356
Alignment:
Q  303 ttctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    |||| |||||||| ||||||||   ||| ||||||||||||||  ||| |||||||||||||||||||  |  ||||||||||||||    
T  4237270 ttctttttgattggttaaaatttacatgggatccaccaaatttgtatgggacccacatgatttggtggtacccatgtgaattttaac 4237356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 8090921 - 8090979
Alignment:
Q  360 tgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtg 418  Q
    ||||||||| || | ||||||||||||||| |||||||| || ||||||||||||||||    
T  8090921 tgatttggtagaacatatgtgaattttaacaaattaaattgagtgtgttgaaaagtgtg 8090979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 25666965 - 25666907
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgat 313  Q
    ||||||||||||||| |||||||||||||  ||| | ||||||||||| ||||||||||    
T  25666965 taagagaaatgctagcaacacacattttaacatacaattttcaacacactctctttgat 25666907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 36283464 - 36283592
Alignment:
Q  261 aaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacat 360  Q
    ||||||||| |||| ||||||||  | ||| |||||||||||||||||||||| |||||||||  ||| | | | || |||||||| ||| | |||||||    
T  36283464 aaatgctagcaacatacatttta--acatacttttcaacacattctctttgatggattaaaat--ttacgtgtttcatcaaatttatatgggtcccacat 36283559  T
Q  361 gatttggtggagcttatgtgaattttaaccaat 393  Q
    |||||||| |  | |||| ||||||||| ||||    
T  36283560 gatttggtaggacctatgcgaattttaatcaat 36283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 1469785 - 1469730
Alignment:
Q  376 atgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgt 429  Q
    ||||||||||||||||||||||| || |||||||||||   |||||||||||||||    
T  1469785 atgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgt 1469730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 6979038 - 6978958
Alignment:
Q  352 gacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 432  Q
    ||||||||||||||| | |  || ||||||||||||||||||||||   ||||  ||||||| | ||||||||||||||||    
T  6979038 gacccacatgatttgataggactcatgtgaattttaaccaattaaagaaaatgcattgaaaaatttgttaaaatgtgtgtt 6978958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 441
Target Start/End: Original strand, 9430230 - 9430297
Alignment:
Q  376 atgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccatt 441  Q
    |||||||||||||||||| |||| |||| |||||||||  |||||||| |||||||||| ||| ||||    
T  9430230 atgtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgttagaatgtgtgttattagcatt 9430297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 2683405 - 2683512
Alignment:
Q  312 attgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaa 411  Q
    |||||||||||||| |||| || ||||| |||||| |   |||||||||||||||||||| |  || | ||||||||||||| |||  || |||  ||||    
T  2683405 attgattaaaattcatatgggacccaccgaatttatactggacccacatgatttggtggaacccatataaattttaaccaatcaaaaagagtgtcgtgaa 2683504  T
Q  412 aagtgtgt 419  Q
    ||||||||    
T  2683505 aagtgtgt 2683512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 29160850 - 29160928
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgg 370  Q
    |||||||||||   ||||| |||||||||||| |  ||||||  ||| ||||||| ||||||||||||| |||||||||    
T  29160850 ttttcaacacaccatctttaattgattaaaatccacatgagactcactaaatttatatgagacccacataatttggtgg 29160928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 368
Target Start/End: Complemental strand, 9430304 - 9430191
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagac 354  Q
    ||||| ||||||||  |||||||||| ||  | | | ||||||||| ||||| |||||||| |||||||||  ||||   ||| |||||||  ||| |||    
T  9430304 taagaaaaatgctaataacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacatgaaccccatcaaatttgtatgggac 9430205  T
Q  355 ccacatgatttggt 368  Q
    ||||||||||||||    
T  9430204 ccacatgatttggt 9430191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 33069176 - 33069297
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| | |||||||| | |||||||||  || ||| ||||||| |||| ||| ||||||||| |||| ||||  |  | |||| |||||||||    
T  33069176 ttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacataatttagtgggacccaagtgatttttaacca 33069275  T
Q  392 attaaatcgaatgtgttgaaaa 413  Q
    || |||  || |||||||||||    
T  33069276 atcaaaaagagtgtgttgaaaa 33069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 35715140 - 35715071
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaatt 324  Q
    |||||||||||| || |||||||||||||  | | | ||||||| ||| |||||||||||| ||||||||    
T  35715140 taagagaaatgccagcaacacacattttaagacacacttttcaatacactctctttgattggttaaaatt 35715071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 256 - 393
Target Start/End: Original strand, 731303 - 731440
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacc 355  Q
    |||||||||||||| || | ||||| ||  | |||||||||||||||||   ||||||||||||||||||  ||||||| ||||||||||| ||| ||||    
T  731303 aagagaaatgctagcaatatacattctaacacatatttttcaacacatttattttgattgattaaaattcacatgagattcaccaaatttatatgggacc 731402  T
Q  356 cacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    ||||||||||||||   || |||| |||||||||||||    
T  731403 cacatgatttggtgcgactcatgtaaattttaaccaat 731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 432
Target Start/End: Complemental strand, 7444446 - 7444269
Alignment:
Q  257 agagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccc 356  Q
    ||||||||| ||| |||||||||| ||  | | | ||||||||||||||||||||||   |||||||||  ||| || | |||||||||| ||| |||||    
T  7444446 agagaaatgttagcaacacacattctaacaaacacttttcaacacattctctttgatgagttaaaattcacatgggacctaccaaatttatatgggaccc 7444347  T
Q  357 acatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
    ||||||||||||||    | | |||||||||||| ||||||   |||||||||||||  |||||||||||||||||||    
T  7444346 acatgatttggtgggaactctttgaattttaaccgattaaagaaaatgtgttgaaaaatgtgtgttaaaatgtgtgtt 7444269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 409
Target Start/End: Original strand, 2542709 - 2542828
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||| |||||||||||| ||||||||   |||||  |||||||||||| |||  |||||||||||||||||||    ||||||||||||||    
T  2542709 atttttcaacacactctctttgattggttaaaatttacatgaggcccaccaaatttatatggaacccacatgatttggtggaagccatgtgaattttaac 2542808  T
Q  390 caattaaatcgaatgtgttg 409  Q
    |||| |||  ||||||||||    
T  2542809 caatcaaagagaatgtgttg 2542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 23318026 - 23317934
Alignment:
Q  305 ctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaa 397  Q
    |||||| |||| |||||||||  ||||||||||| ||||||| ||| |||||||||||||||||||  | ||||||||||||||| |||||||    
T  23318026 ctctttaattggttaaaattcacatgagatccactaaatttatatgggacccacatgatttggtgggacctatgtgaattttaacaaattaaa 23317934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 418
Target Start/End: Complemental strand, 45215457 - 45215332
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||| | |   || ||||||||||||||  || ||||| ||||||||||    
T  45215457 ttttcgacacattctttttgattgattaaaattcatatgagttccaccaaatttatacggatcctacatgatttggtgggactcatgtg-attttaacca 45215359  T
Q  392 attaaatcgaatgtgttgaaaagtgtg 418  Q
    ||  ||   ||||||||||||||||||    
T  45215358 atctaagaaaatgtgttgaaaagtgtg 45215332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 432
Target Start/End: Complemental strand, 38663783 - 38663639
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||| | ||| ||| |||| |||||||||  ||| || |||||||||||| ||  |||||| ||||||||||||  | |||||||||| ||||    
T  38663783 atttttcaacatactctttttaattggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtgggacctatgtgaattgtaac 38663684  T
Q  390 caattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
    |||| |||  || |||||||||||   ||||||||||||||||||    
T  38663683 caatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtgtt 38663639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 261 - 393
Target Start/End: Complemental strand, 49403633 - 49403501
Alignment:
Q  261 aaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacat 360  Q
    ||||| ||| |||||| ||||||   |||||||||||||||| | | ||| |||  |||||||||  |||||| |||||||||||| |||  ||||||||    
T  49403633 aaatgttagcaacacatattttaacctatatttttcaacacacttttttttatttgttaaaattcacatgagacccaccaaatttatatggaacccacat 49403534  T
Q  361 gatttggtggagcttatgtgaattttaaccaat 393  Q
     ||||| |||  |||||||||||||||||||||    
T  49403533 aatttgatgggacttatgtgaattttaaccaat 49403501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 40374093 - 40374183
Alignment:
Q  339 caaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtg 430  Q
    |||||||| ||| ||||||||||||||||||| ||  |||||||||||||||||| |||| ||  || ||||||| ||||||||||||||||    
T  40374093 caaatttatatgggacccacatgatttggtggggcc-atgtgaattttaaccaatcaaatagagcgtattgaaaaatgtgttaaaatgtgtg 40374183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 419
Target Start/End: Original strand, 31970127 - 31970256
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||| ||| |||||||| |||||||||  ||   | |||||||||||| ||| |||||||||||||||||||  |  || |||| |||||     
T  31970127 atttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacatgatttggtgggacccatatgaaatttaat 31970226  T
Q  390 caattaaatcgaatgtgttgaaaagtgtgt 419  Q
    ||||||||  || |||||||||||| ||||    
T  31970227 caattaaaaagagtgtgttgaaaagcgtgt 31970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 393
Target Start/End: Complemental strand, 939498 - 939363
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||| || ||||||||||  |||  | |||||||||||| |||||||||| ||||||||   ||| ||  ||||||||||| ||| || |||    
T  939498 gagaaatgctagcaagacacattttaacatacgtatttcaacacattatctttgattggttaaaatttacatgggacacaccaaatttatatgggatcca 939399  T
Q  358 catgatttggtggagcttatgtgaattttaaccaat 393  Q
    ||| ||||| ||    ||||||||||||||||||||    
T  939398 cataatttgatgagatttatgtgaattttaaccaat 939363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 420
Target Start/End: Complemental strand, 40669091 - 40668931
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||| |||||||||||||  | | | ||||||||||| |||||||||||| |||||||||  | | | ||||||||||||| ||| | ||||    
T  40669091 gagaaatgctagcaacacacatttta--acacacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaatttatatgggtccca 40668994  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtt 420  Q
    ||| |||| |||   |  |||||| ||||||||||| |||  || |||||| ||| |||||||    
T  40668993 cataattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgttaaaatgtgtgtt 40668931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 40669023 - 40669078
Alignment:
Q  377 tgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 432  Q
    ||||||||||||||||| |||  || ||||||||||||||||||||||||||||||    
T  40669023 tgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgttaaaatgtgtgtt 40669078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 45563196 - 45563118
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgg 370  Q
    ||||||||||| | |||||||| | ||||||||   ||||||||||||||||||| |||||| | ||||||||||||||    
T  45563196 ttttcaacacactttctttgatcggttaaaatttacatgagatccaccaaatttatatgagatcaacatgatttggtgg 45563118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 45925241 - 45925198
Alignment:
Q  289 tatttttcaacacattctctttgattgattaaaattcttatgag 332  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  45925241 tatttttcaacacattttctttgattgattaaaattcatatgag 45925198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 51810679 - 51810765
Alignment:
Q  259 agaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttaca 348  Q
    ||||||||||  || ||| |||||| ||||||||||||||||||   |||||||||||||||||||   ||||||||||  |||||||||    
T  51810679 agaaatgctaacaatacatattttattatatatttttcaacaca---tctttgattgattaaaatttacatgagatccattaaatttaca 51810765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 23412895 - 23412798
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||| ||| | ||| |||||||||||||  | |||||| ||||||||||| ||  |||||  ||||||||||||| | |||||||||| ||||    
T  23412895 ttttcaacatattttatttaattgattaaaatttatttgagattcaccaaatttatatatgacccgtatgatttggtggaacctatgtgaattataac 23412798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 432
Target Start/End: Original strand, 34437605 - 34437748
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||| | |||||||||||| |||||||||  ||| |  |||||||||  |  || |||||| || |||||| ||  |  ||||||||||||||    
T  34437605 atttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatc-atgtgggacccatataatttggggggacccatgtgaattttaac 34437703  T
Q  390 caattaaatcgaatgtgttgaaaagt--gtgttaaaatgtgtgtt 432  Q
    |||| |||  || |||||||||||||  |||||||||||||||||    
T  34437704 caatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgtt 34437748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 7444255 - 7444323
Alignment:
Q  257 agagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattc 325  Q
    ||||||||||||| |||||||||||||  | | ||||||||||||||| ||||| || | |||||||||    
T  7444255 agagaaatgctagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattc 7444323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 5695793 - 5695681
Alignment:
Q  304 tctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaat 403  Q
    |||||||||||| ||||||||| ||||||| ||| |||||||| ||| || || ||||||||||| |  || || |||||||||| ||| ||||   |||    
T  5695793 tctctttgattgtttaaaattcatatgagacccatcaaatttatatgggatcc-catgatttggtag-tctcatatgaattttaaacaa-taaaaaaaat 5695697  T
Q  404 gtgttgaaaagtgtgt 419  Q
    ||||||||||||||||    
T  5695696 gtgttgaaaagtgtgt 5695681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 369
Target Start/End: Original strand, 27666968 - 27667079
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||  || ||||||||||  ||| |||||| || ||||| | ||||||||||||||||||  || |  || || ||||||| ||| ||| ||    
T  27666968 gagaaatgctatcaatacacattttaacatacattttttaatacattgtatttgattgattaaaattcacataaattctactaaatttatatgggactca 27667067  T
Q  358 catgatttggtg 369  Q
    ||||||||||||    
T  27667068 catgatttggtg 27667079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 38663630 - 38663693
Alignment:
Q  262 aatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattc 325  Q
    |||| ||| |||||||||||||  | ||||||||||||||| |||||||||||| ||| |||||    
T  38663630 aatgttagtaacacacattttaacacatatttttcaacacactctctttgattggttacaattc 38663693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 258 - 389
Target Start/End: Original strand, 14345126 - 14345257
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||| ||| |||||| ||||||  | ||||||||||||||| | |||||||||| ||||||| |  |||||| |||||||||||| ||| ||||||    
T  14345126 gagaaatgttagcaacacatattttaacacatatttttcaacacactttctttgattggttaaaatccacatgagacccaccaaatttatatgggaccca 14345225  T
Q  358 catgatttggtggagcttatgtgaattttaac 389  Q
    |||||||||||||   | ||||||||||||||    
T  14345226 catgatttggtgggattcatgtgaattttaac 14345257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 255 - 393
Target Start/End: Original strand, 35357289 - 35357427
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagac 354  Q
    ||||||||||||||| |||||||||| ||  | ||||||||||||||| |||||||||||| |||||| ||  ||| || |||||||||||| ||| |||    
T  35357289 taagagaaatgctagcaacacacattctaacaaatatttttcaacacactctctttgattggttaaaactcacatgtgaaccaccaaatttatatgggac 35357388  T
Q  355 ccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
      |||||||||||| |  |  ||||||||||||||||||    
T  35357389 ttacatgatttggtaggacccatgtgaattttaaccaat 35357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 258 - 432
Target Start/End: Original strand, 36480682 - 36480858
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||  |||||||||||||  | |   ||| ||||||| |||||||||||| |||||||||  ||| || ||| |||||||| ||| ||||||    
T  36480682 gagaaatgctaacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaatttatatgggaccca 36480781  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
    |||||||||||||  |  |||||||||||| ||||| |||  ||   |||||||||  |||||||||||||||||||    
T  36480782 catgatttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgtgtt 36480858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 37341305 - 37341200
Alignment:
Q  340 aaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtttttacca 439  Q
    ||||||| |||||||||||||||||||||||| |  |||||||||||||| ||| |||  ||||||  || |||||||||||||||||||||| ||| ||    
T  37341305 aaatttatatgagacccacatgatttggtggaccc-atgtgaattttaactaatcaaaaagaatgt--tggaaagtgtgttaaaatgtgtgttgttaaca 37341209  T
Q  440 ttcctcaaa 448  Q
    |||||||||    
T  37341208 ttcctcaaa 37341200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 445
Target Start/End: Original strand, 3901504 - 3901656
Alignment:
Q  288 atatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaatttta 387  Q
    |||||||||||||||||||||||||||| |||||||||  ||| |  |||||||||   |||| |   |||||||||||||||  |  ||||||||||||    
T  3901504 atatttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaat---catgtg---cacatgatttggtgggacccatgtgaatttta 3901597  T
Q  388 accaattaaatcgaatgtgttgaaaagtgtgt-taaaatgtgtgtttttaccattcctc 445  Q
    |||||| |||  || ||||||||||||||||| | |||||| |||| ||| ||||||||    
T  3901598 accaatcaaagagagtgtgttgaaaagtgtgtgttaaatgtatgttgttagcattcctc 3901656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 317 - 432
Target Start/End: Original strand, 36007389 - 36007506
Alignment:
Q  317 ttaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtg 416  Q
    ||||||||| |||| ||||||||||||||| ||| | ||||||||||||   || ||| |||||||||||||||| | |||   ||||||||||||||||    
T  36007389 ttaaaattcatatgggatccaccaaatttatatggggcccacatgatttatgggggctcatgtgaattttaaccactcaaagaaaatgtgttgaaaagtg 36007488  T
Q  417 --tgttaaaatgtgtgtt 432  Q
      ||||||||||||||||    
T  36007489 aatgttaaaatgtgtgtt 36007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 40763397 - 40763506
Alignment:
Q  312 attgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaa 411  Q
    |||| |||||||||  |||||||||| |||||||| ||| || ||||||||||||||||| || | |||||||||||  |||||||  || | |||||||    
T  40763397 attggttaaaattcacatgagatccatcaaatttatatgggatccacatgatttggtggaactcaggtgaattttaataaattaaagagagtatgttgaa 40763496  T
Q  412 aagtgtgtta 421  Q
    ||||||||||    
T  40763497 aagtgtgtta 40763506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 445
Target Start/End: Complemental strand, 19560761 - 19560604
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||| |||||||||||| ||||||  |  | | ||||||| ||||||  ||| |||||||||||||||||||  |  || ||||||| |||    
T  19560761 atttttcaacacactctctttgattggttaaaaagcacaagggatccactaaatttgtatgggacccacatgatttggtgggacccatatgaatttcaac 19560662  T
Q  390 caattaaatcgaatgtgttgaaaagtgt--gttaaaatgtgtgtttttaccattcctc 445  Q
    |||| ||| ||| ||| |||||||||||  |||| ||||| |||| ||| ||||||||    
T  19560661 caatcaaagcgagtgtattgaaaagtgtgcgttagaatgtatgttgttagcattcctc 19560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 40554168 - 40554029
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||| ||| |||||||||||| |||||| ||  ||||| |||| |||||||| ||| | | |||||||||||||||  |  ||||||||||||| ||    
T  40554168 ttttcaatacactctctttgattggttaaaactcacatgagttccatcaaatttatatgggtctcacatgatttggtgggacccatgtgaattttaatca 40554069  T
Q  392 attaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 432  Q
    ||| ||  || | | || |||||||||||||||||||||||    
T  40554068 attgaagagagt-ttttaaaaagtgtgttaaaatgtgtgtt 40554029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 19158788 - 19158688
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||| ||| ||| |||||||  ||||||||| ||||| | |||||||||||| |||| |||||||| |||| ||||  || ||||||||||||||||    
T  19158788 ttttcaatacactctttttgattagttaaaattcatatga-acccaccaaatttatatgaaacccacataatttagtgggactcatgtgaattttaacca 19158690  T
Q  392 at 393  Q
    ||    
T  19158689 at 19158688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 442
Target Start/End: Complemental strand, 31205495 - 31205347
Alignment:
Q  296 caacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaatta 395  Q
    ||||||| |||||||||||| | |||||||  |||||| ||||||| |||| ||| |||||||||||||||||    |  |||| ||||||||||||| |    
T  31205495 caacacactctctttgattggtcaaaattcacatgagacccaccaattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatca 31205396  T
Q  396 aatcgaatgtgttg--aaaagtgtgttaaaatgtgtgtttttaccattc 442  Q
    ||  || |||||||  |||  |||||||||| ||||||| ||| |||||    
T  31205395 aagagagtgtgttggaaaatatgtgttaaaacgtgtgttgttagcattc 31205347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 49750607 - 49750644
Alignment:
Q  288 atatttttcaacacattctctttgattgattaaaattc 325  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49750607 atatttttcaacacattctctttgattgattaaaattc 49750644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 447
Target Start/End: Complemental strand, 32881129 - 32880970
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||| ||| ||| |||| ||||||||   | |||| |||||||||||| ||| || ||||||||||| ||||  |  |||||||| |||||    
T  32881129 atttttcaacacaatcttttttattggttaaaatttacacgagacccaccaaatttatatgggatccacatgattttgtgggacccatgtgaatattaac 32881030  T
Q  390 caattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctcaa 447  Q
    |||| ||   || | |||||||||  ||||| ||||||||||||| ||| |||| |||||    
T  32881029 caatcaaggagagtatgttgaaaaatgtgtgataaaatgtgtgttcttagcatttctcaa 32880970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 29955168 - 29955045
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||| ||| |||  ||||||  ||||||||| |||| |||||| ||||||||  || ||||||||||||||| |||  |  ||||||||||||||||    
T  29955168 ttttcaatacactcttcttgattagttaaaattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattttaacca 29955069  T
Q  392 attaaatcgaatgtgttgaaaagt 415  Q
    || |||   | |||||||||||||    
T  29955068 atcaaaaaaagtgtgttgaaaagt 29955045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 30004322 - 30004199
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||| ||| |||  ||||||  ||||||||| |||| |||||| ||||||||  || ||||||||||||||| |||  |  ||||||||||||||||    
T  30004322 ttttcaatacactcttcttgattagttaaaattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattttaacca 30004223  T
Q  392 attaaatcgaatgtgttgaaaagt 415  Q
    || |||   | |||||||||||||    
T  30004222 atcaaaaaaagtgtgttgaaaagt 30004199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 393
Target Start/End: Original strand, 51541220 - 51541355
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||| |||| || || || |||| ||||||||| ||| | | |||||||| |||||| ||  ||| || ||||||||  || ||  ||||||    
T  51541220 gagaaatgctagcaacaaaccttctaatatacatttttcaatacactatttttgattggttaaaactcacatgtgacccaccaaaagtatataggaccca 51541319  T
Q  358 catgatttggtggagcttatgtgaattttaaccaat 393  Q
    |||||||||||||  || || |||||||||||||||    
T  51541320 catgatttggtgggactcatctgaattttaaccaat 51541355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 3901623 - 3901508
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| |||||||||||| |||||||||  ||| |  |||||||||   |||| |   |||||||||||||||  |  ||||||||||||||||    
T  3901623 ttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaat---catgtg---cacatgatttggtgggacccatgtgaattttaacca 3901530  T
Q  392 attaaatcgaatgtgttgaaaa 413  Q
    || |||  ||||||||||||||    
T  3901529 atcaaagagaatgtgttgaaaa 3901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 37189301 - 37189196
Alignment:
Q  265 gctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatt 364  Q
    ||||| ||||||||||||| |||| |||||| |||| | |||||||||||| |||||||||  ||||  ||||| |||| || | | | | |||||||||    
T  37189301 gctagcaacacacattttaatatacattttttaacagactctctttgattggttaaaattcacatgaattccactaaatctatacgggtctcacatgatt 37189202  T
Q  365 tggtgg 370  Q
    ||||||    
T  37189201 tggtgg 37189196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 55196240 - 55196285
Alignment:
Q  289 tatttttcaacacattctctttgattgattaaaattcttatgagat 334  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||    
T  55196240 tatttttcaacacattctttttaattgattaaaattcatatgagat 55196285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 419
Target Start/End: Original strand, 11532487 - 11532571
Alignment:
Q  335 ccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||| ||||||| ||| || ||||||||||||||||| |  |||||||||||||||||| |||  || ||||||  |||||||||    
T  11532487 ccactaaatttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgt 11532571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 45332557 - 45332629
Alignment:
Q  296 caacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggt 368  Q
    ||||||| | ||||| |||| |||||||||  |||  |||||||||||||| ||| |||||||||||||||||    
T  45332557 caacacactttctttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgatttggt 45332629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 26986436 - 26986373
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaa 321  Q
    ||||||| | || ||||||| ||||| |||| ||||||||||||| ||||||||||| ||||||    
T  26986436 gagaaataccaggaacacactttttaatatacatttttcaacacactctctttgattaattaaa 26986373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 446
Target Start/End: Complemental strand, 36480753 - 36480681
Alignment:
Q  376 atgtgaattttaaccaattaaatcgaatgtgttgaaaag--tgtgttaaaatgtgtgtttttaccattcctca 446  Q
    |||||||||||||||||| |||  || ||||||| ||||  |||||||||||||||||| ||| |||| ||||    
T  36480753 atgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttagcatttctca 36480681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 258 - 445
Target Start/End: Original strand, 12731529 - 12731718
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||| ||| |||||| ||| || || | | || ||||||||||||||||||||| |||||||||  |||||| ||| ||||||||  || ||||||    
T  12731529 gagaaatgttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattcacatgagacccatcaaatttatttgggaccca 12731628  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttg--aaaagtgtgttaaaatgtgtgtttttaccattcctc 445  Q
    ||||||||||||||   ||||| ||||||||||||| |||  || |||||||  ||| |||||||| ||| ||||||  || ||||||||    
T  12731629 catgatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtgttgctagcattcctc 12731718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 259 - 346
Target Start/End: Original strand, 24110039 - 24110126
Alignment:
Q  259 agaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaattta 346  Q
    ||||||||||| |||||| ||| ||  ||| ||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||    
T  24110039 agaaatgctagcaacacatattctaaaatacatttttcaacacactctctttgattggttaaaattcatatgtgatccaccaaattta 24110126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 257 - 370
Target Start/End: Complemental strand, 5706784 - 5706670
Alignment:
Q  257 agagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatcca-ccaaatttacatgagacc 355  Q
    ||||||||| ||| |||||||||||||  | ||| ||||||||||| |||||||||||||||||||||   ||| || ||| | ||||| | |||||||     
T  5706784 agagaaatgatagcaacacacattttaacacatacttttcaacacactctctttgattgattaaaatttacatgggacccatcaaaattgatatgagacg 5706685  T
Q  356 cacatgatttggtgg 370  Q
    |||||||||||||||    
T  5706684 cacatgatttggtgg 5706670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 449
Target Start/End: Complemental strand, 1473697 - 1473586
Alignment:
Q  340 aaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttac 437  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||||||||||||| |||   | |||||||||||  |||| ||||||||||||||  ||     
T  1473697 aaattcacatgggacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgttgctag 1473598  T
Q  438 cattcctcaaat 449  Q
    ||||| ||||||    
T  1473597 cattcttcaaat 1473586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 365
Target Start/End: Original strand, 7303455 - 7303560
Alignment:
Q  259 agaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccac 358  Q
    ||||||||||  ||||||||||||| || |  |||||||| ||||||||||||||||| |||||||  |||  ||||||| ||||||| |||  ||||||    
T  7303455 agaaatgctaacaacacacattttaatacacgtttttcaatacattctctttgattga-taaaatttatatatgatccactaaatttatatggaacccac 7303553  T
Q  359 atgattt 365  Q
    |||||||    
T  7303554 atgattt 7303560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 1473594 - 1473675
Alignment:
Q  262 aatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaat 343  Q
    |||||||| ||||||||||||| || | ||||||||||||| | |||||||||| |||||||||  ||| | ||||||||||    
T  1473594 aatgctagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaat 1473675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 34093942 - 34093802
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggt-ggagcttatgtgaattttaacc 390  Q
    ||||||||| | |||||||||||| |||||||||  ||| ||||||| |||||||||||||| |||  |||||| || ||| | ||  |  |||||||||    
T  34093942 ttttcaacataatctctttgattggttaaaattcacatgggatccactaaatttacatgagatccatgtgatttagtgggaacctaaat-tattttaacc 34093844  T
Q  391 aattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 432  Q
    ||| |||| || ||| ||  ||||||||||||||||||||||    
T  34093843 aatcaaatagagtgttttataaagtgtgttaaaatgtgtgtt 34093802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 4494401 - 4494477
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttg 366  Q
    ||||||||||||| | |||||||||| |||||||||   |  ||||||||||||||| ||||||| |||||||||||    
T  4494401 atttttcaacacactttctttgattggttaaaattcacgtctgatccaccaaatttatatgagactcacatgatttg 4494477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 24783998 - 24783918
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgg 370  Q
    |||||| |||||| | |||||||||||||||||||   |||||||||| |||||||| |||  | ||||||||||||||||    
T  24783998 attttttaacacactatctttgattgattaaaatttacatgagatccatcaaatttatatggaatccacatgatttggtgg 24783918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 6643367 - 6643425
Alignment:
Q  335 ccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    |||||||||||| ||| |||||||||||||||||||  | ||| |||||||||||||||    
T  6643367 ccaccaaatttatatgggacccacatgatttggtgggacctatatgaattttaaccaat 6643425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 432
Target Start/End: Original strand, 4032994 - 4033143
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg----gag-cttatgtgaatt 384  Q
    ||||||||||||| ||||||| |||| || |||||  ||||  ||||| |||||||| ||| ||||||||| ||||||||    ||| ||  ||||||||    
T  4032994 atttttcaacacactctctttaattggttgaaatttatatggaatccatcaaatttatatgggacccacataatttggtgagatgagactcgtgtgaatt 4033093  T
Q  385 ttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
    ||||||||| |||   | ||| |||||||  |||||||||||||||||||    
T  4033094 ttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgtgtt 4033143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 11651022 - 11650918
Alignment:
Q  290 atttttcaacacattctctttgattga-ttaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaa 388  Q
    ||||||||||| | ||||||||||||  ||||||||   ||| || |||||||||||| ||| ||||||||| |||||||||     |||||||||||||    
T  11651022 atttttcaacataatctctttgattggcttaaaatttacatgggacccaccaaatttatatgggacccacataatttggtgggatccatgtgaattttaa 11650923  T
Q  389 ccaat 393  Q
    |||||    
T  11650922 ccaat 11650918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 10729959 - 10730013
Alignment:
Q  379 tgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgttt 433  Q
    |||||||||||| || |||  ||  ||||||||||||||||||||||||||||||    
T  10729959 tgaattttaaccgatcaaagagagcgtgttgaaaagtgtgttaaaatgtgtgttt 10730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 3150295 - 3150234
Alignment:
Q  336 caccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaa 397  Q
    ||||||||||| |||  | ||||||||||||||||  |  ||||||||||||||||||||||    
T  3150295 caccaaatttatatggaatccacatgatttggtgggacccatgtgaattttaaccaattaaa 3150234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 10730025 - 10729960
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattc 325  Q
    ||||||||||||||||||||||||||  | | | ||||||||||  |||||||||| | |||||||||    
T  10730025 gagaaatgctagaaacacacatttta--acacacttttcaacacgctctctttgatcggttaaaattc 10729960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 419
Target Start/End: Original strand, 40175902 - 40176030
Alignment:
Q  292 ttttcaacaca-ttctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacc 390  Q
    ||||||||||| || | ||| |||| |||||||||  ||| ||||||||||||||| ||| ||||||||| |||||||||  |  |||||||||||||||    
T  40175902 ttttcaacacactttttttttattggttaaaattcacatgggatccaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaacc 40176001  T
Q  391 aattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||  || |||||| ||||||||||    
T  40176002 aattaaaaggagtgtgttaaaaagtgtgt 40176030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 393
Target Start/End: Complemental strand, 4994319 - 4994184
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacc 355  Q
    |||||||| ||||| |||||||||||||  | | | |||| ||||||  ||||||||||| ||||||||  ||||||| |||| ||||||| ||| ||||    
T  4994319 aagagaaacgctagcaacacacattttaacacacaatttttaacaca--ctctttgattggttaaaatttgtatgagacccacaaaatttatatgggacc 4994222  T
Q  356 cacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    |||||||||||||||  || ||  ||||||||||||||    
T  4994221 cacatgatttggtgggactcataagaattttaaccaat 4994184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 35586533 - 35586455
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgg 370  Q
    ||||||||||||||||||| ||||||||||||||  ||  || |||||||||||| ||||||| |||||||||||||||    
T  35586533 ttttcaacacattctctttaattgattaaaattcacataggacccaccaaatttatatgagactcacatgatttggtgg 35586455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 419
Target Start/End: Original strand, 40694589 - 40694749
Alignment:
Q  259 agaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccac 358  Q
    ||||||||||| ||||||| |||||  | | ||||| ||||||| ||| |||||||| ||||||||   ||| || ||||||||| || ||  |||||||    
T  40694589 agaaatgctagcaacacacgttttaacacacattttacaacacaatctatttgattggttaaaattaacatgcgacccaccaaatctatataggacccac 40694688  T
Q  359 atgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    ||||||||||||  |  |||||||||||||| ||| |||  || ||| |||||||||||||    
T  40694689 atgatttggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgt 40694749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 419
Target Start/End: Complemental strand, 2288765 - 2288602
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacc 355  Q
    |||||||||||||| |||||||||| ||  | | | |||||||||   |||||||||||| |||||||||  ||| |||||| |||||||| ||| ||||    
T  2288765 aagagaaatgctagcaacacacattctaaaagacacttttcaacaatctctctttgattggttaaaattcacatgggatccatcaaatttatatgggacc 2288666  T
Q  356 cacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    ||  |||||||||| | |  |||| ||||||||||||| |||  || ||||||  |||||||||    
T  2288665 catgtgatttggtgaaacccatgtaaattttaaccaatcaaagagagtgtgttcgaaagtgtgt 2288602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 34504380 - 34504511
Alignment:
Q  286 atatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattt 385  Q
    ||||||||||||||||| ||| |||||||| |||||||||  |||  |  ||||||||||| ||| ||||||||||||||||||   |  ||| ||||||    
T  34504380 atatatttttcaacacactctttttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatgatttggtgtgacccatgcgaattt 34504479  T
Q  386 taaccaattaaatcgaatgtgttgaaaagtgt 417  Q
    |||||||| |||   | |||||||||||||||    
T  34504480 taaccaatcaaaaaaagtgtgttgaaaagtgt 34504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 42072747 - 42072654
Alignment:
Q  335 ccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtg 428  Q
    |||||||||||| |||||||||| ||||||||||||  |  |||||||| ||||||||| |||  || |||||||||  |||||||||||||||    
T  42072747 ccaccaaatttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgttgaagtgtgtgttaaaatgtg 42072654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 445
Target Start/End: Original strand, 8402455 - 8402640
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacc 355  Q
    |||||||||||||| |||||||  ||||  | | | |||||||||||  ||||||||||| |||||||||  ||| |  ||| |||||| | ||| | ||    
T  8402455 aagagaaatgctagcaacacactgttta--acacacttttcaacaca--ctctttgattgtttaaaattcacatgggtcccaacaaattaatatgggtcc 8402550  T
Q  356 cacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctc 445  Q
    ||||||||||||||| ||  ||| || ||||||||||| ||||  | |||||||||||  |||||||||||||||||||  || ||||||||    
T  8402551 cacatgatttggtggggcccatgagagttttaaccaatcaaat--agtgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcctc 8402640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 419
Target Start/End: Complemental strand, 38835136 - 38835003
Alignment:
Q  288 atatttttcaacacattctc--tttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattt 385  Q
    ||||||||||||||||||||  |||||||| |||||||||  ||   ||| |||||||||| ||| ||||| ||||||||||||   |  ||||||||||    
T  38835136 atatttttcaacacattctctttttgattggttaaaattcacatagaatctaccaaatttatatgggacccgcatgatttggtgagacccatgtgaattt 38835037  T
Q  386 taaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    ||  |||| |||  ||||||||||||| ||||||    
T  38835036 tagtcaatcaaagagaatgtgttgaaatgtgtgt 38835003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 389
Target Start/End: Complemental strand, 40696351 - 40696221
Alignment:
Q  259 agaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccac 358  Q
    ||||||||||| ||||||| |||||  | | ||||| ||||||| ||||||| |||| ||||||||   ||| || ||||||||| || ||   ||||||    
T  40696351 agaaatgctagcaacacacgttttaacacacattttgcaacacaatctctttcattggttaaaattaacatgcgacccaccaaatctatatagaacccac 40696252  T
Q  359 atgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||||  |  ||||||||||||||    
T  40696251 atgatttggtgggacccatgtgaattttaac 40696221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 286 - 415
Target Start/End: Original strand, 21124954 - 21125082
Alignment:
Q  286 atatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattt 385  Q
    ||||| ||||| ||||| ||| |||||||| ||||||||| ||||  ||||| |||||||| ||| || |||||||||||| ||   |  |||| |||||    
T  21124954 atatacttttcgacacactct-tttgattggttaaaattcatatggaatccatcaaatttatatgggatccacatgatttgatgagacccatgtaaattt 21125052  T
Q  386 taaccaattaaatcgaatgtgttgaaaagt 415  Q
    ||| |||| |||| ||||||||| ||||||    
T  21125053 taatcaatcaaatagaatgtgttaaaaagt 21125082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 26018476 - 26018570
Alignment:
Q  297 aacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    |||||| |||| ||||||| |||||||||  | |||| |||||||||||| ||| ||||||||| ||||| |||  |  ||||||||||||||||||    
T  26018476 aacacactctcgttgattggttaaaattc--acgagacccaccaaatttatatgggacccacataatttgatgggacccatgtgaattttaaccaat 26018570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 27072945 - 27072868
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    ||||||||||||||| |||||||| ||||||||   ||  || |||||||||||| ||| || |||||||||||||||    
T  27072945 ttttcaacacattctttttgattggttaaaatttacattggacccaccaaatttatatgggatccacatgatttggtg 27072868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 35586482 - 35586539
Alignment:
Q  362 atttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||||  | |||||||||||||| ||||||||  ||||||||||||||||||||    
T  35586482 atttggtgggtcctatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgt 35586539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 23848240 - 23848311
Alignment:
Q  257 agagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatg 330  Q
    ||||||||||||  |||||||||||||  | | | ||||||||||| | |||||||||||||||||||| ||||    
T  23848240 agagaaatgctaacaacacacatttta--acacacttttcaacacactatctttgattgattaaaattcatatg 23848311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 23848283 - 23848245
Alignment:
Q  403 tgtgttgaaaagtgtgttaaaatgtgtgtttttaccatt 441  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  23848283 tgtgttgaaaagtgtgttaaaatgtgtgttgttagcatt 23848245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 36914874 - 36915003
Alignment:
Q  267 tagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttg 366  Q
    |||||||| ||||||||  | | ||||||||||| ||| ||||| ||||||||||||||  |||   || |||||||||| ||| | | |||||||| ||    
T  36914874 tagaaacatacattttaacacacatttttcaacatattatctttaattgattaaaattcacatggattcaaccaaatttatatg-gcctcacatgatctg 36914972  T
Q  367 gtggagcttatgtgaattttaaccaattaaa 397  Q
     |||| |  || |||||||||||||||||||    
T  36914973 ctggaacccatatgaattttaaccaattaaa 36915003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 13772523 - 13772490
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattc 325  Q
    |||| |||||||||||||||||||||||||||||    
T  13772523 ttttaaacacattctctttgattgattaaaattc 13772490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 17893299 - 17893404
Alignment:
Q  265 gctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatt 364  Q
    ||||| |||||||||||||  ||| |||||| |||| | |||||||||||  |||||| ||  ||||| ||||| |||| || ||| | | |||||||||    
T  17893299 gctagcaacacacattttaacatacattttttaacagactctctttgattagttaaaactcacatgagttccactaaatctatatgggtctcacatgatt 17893398  T
Q  365 tggtgg 370  Q
    ||||||    
T  17893399 tggtgg 17893404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 30262764 - 30262861
Alignment:
Q  289 tatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaatttt 386  Q
    |||| ||||||||||||| ||| |||| ||||||||  ||||||  |||||||||||| |||  || || ||||| |||||||   ||||||||||||    
T  30262764 tattcttcaacacattcttttttattggttaaaatttatatgagtcccaccaaatttatatggtactcaaatgatgtggtggaatctatgtgaatttt 30262861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 38835010 - 38835042
Alignment:
Q  293 tttcaacacattctctttgattgattaaaattc 325  Q
    |||||||||||||||||||||||| ||||||||    
T  38835010 tttcaacacattctctttgattgactaaaattc 38835042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 26862927 - 26863077
Alignment:
Q  297 aacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaa 396  Q
    |||||| |||| ||||||| |||||||||  ||| ||| ||||| ||||| ||  |||||||||||||||||||  |  |||||||||||||||||||||    
T  26862927 aacacactctccttgattggttaaaattcacatgggattcaccatatttatataggacccacatgatttggtgggacccatgtgaattttaaccaattaa 26863026  T
Q  397 atcgaatgtgttgaaaagtgtg--ttaaaatgtgtgtttttaccattcctc 445  Q
    |  || | || |||||||||||  ||||||||||||||  || ||||||||    
T  26863027 agagagtttgatgaaaagtgtgtattaaaatgtgtgttgctagcattcctc 26863077  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 45200580 - 45200501
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgga 371  Q
    ||||||| ||| ||| ||| |||||||||||||| | |||| ||||||||||||| |||||| |||||||||||||||||    
T  45200580 ttttcaatacactctttttaattgattaaaattcatttgaggtccaccaaatttatatgagatccacatgatttggtgga 45200501  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 419
Target Start/End: Original strand, 49106919 - 49107041
Alignment:
Q  296 caacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaatta 395  Q
    |||||||  |||||||||||||||||||||  ||| |  | |||||||||| ||| | ||| |||||||||||||  | ||||||||||||||||||| |    
T  49106919 caacacacactctttgattgattaaaattcacatgggtcctaccaaatttatatg-gtcccgcatgatttggtgggacctatgtgaattttaaccaatca 49107017  T
Q  396 aatcgaatgtgttgaaaagtgtgt 419  Q
    ||  || |||||||||||||||||    
T  49107018 aagagagtgtgttgaaaagtgtgt 49107041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 397
Target Start/End: Original strand, 2276286 - 2276391
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatcc-accaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacc 390  Q
    ||||||||||| |||||||||||| |||||||||  ||| ||||| |||||||||| | | ||||||||| |||||||||   | |||||||||||||||    
T  2276286 ttttcaacacactctctttgattggttaaaattcacatg-gatcccaccaaatttataagggacccacataatttggtgggattcatgtgaattttaacc 2276384  T
Q  391 aattaaa 397  Q
    |||||||    
T  2276385 aattaaa 2276391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 420
Target Start/End: Original strand, 3235534 - 3235696
Alignment:
Q  258 gagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccca 357  Q
    |||||||||||  |||||||||||||  | | | ||| ||| ||| |||||||||||| |||||||||  |||||| ||| |||||||||||| ||||||    
T  3235534 gagaaatgctaacaacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacccatcaaatttacatgggaccca 3235633  T
Q  358 catgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtt 420  Q
    |||  || ||| |  |  |||||||||||||||||| |||  || ||||||| || |||||||    
T  3235634 catatttgggtcggacccatgtgaattttaaccaatcaaaaagagtgtgttggaatgtgtgtt 3235696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 317 - 431
Target Start/End: Original strand, 316393 - 316509
Alignment:
Q  317 ttaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--g 414  Q
    |||||||||  ||||| ||||||||||||  ||||||||||| |||||| ||||| || ||||  |||||| ||||| |||  ||||||||||||||  |    
T  316393 ttaaaattcacatgagttccaccaaatttgtatgagacccacttgatttagtggaactcatgtagattttatccaatcaaagagaatgtgttgaaaaatg 316492  T
Q  415 tgtgttaaaatgtgtgt 431  Q
    |||||||||||| ||||    
T  316493 tgtgttaaaatgcgtgt 316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 445
Target Start/End: Original strand, 10056632 - 10056787
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||| ||| |||||||| | |||||||  |||  | ||||||| |||| ||| |||||||||||||||| ||  |  || || |||||||| |    
T  10056632 ttttcaacacactctttttgattggtcaaaattcacatggaacccaccaattttatatgggacccacatgatttggagggacccatatggattttaacta 10056731  T
Q  392 attaaatcgaatgtgttgaaaagt--gtgttaaaatgtgtgtttttaccattcctc 445  Q
    ||||||  || |||||||||||||  |||||| |||||||||| ||| ||||||||    
T  10056732 attaaagagagtgtgttgaaaagtgcgtgttagaatgtgtgttgttagcattcctc 10056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 419
Target Start/End: Original strand, 12275714 - 12275874
Alignment:
Q  257 agagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagaccc 356  Q
    ||||||||||||| |||||||||| ||  | | | ||| ||||||| ||||||  |||| |||||| ||  ||| || |||||||||||| ||| |||||    
T  12275714 agagaaatgctagcaacacacattcta--acacactttccaacacactctcttcaattggttaaaaatcacatgggacccaccaaatttatatgggaccc 12275811  T
Q  357 acatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    ||||||||||||||  |  || |||||||||||||||  ||  || ||||||| |||||||||    
T  12275812 acatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgt 12275874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 24516670 - 24516585
Alignment:
Q  308 tttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    ||||||||||||||||||  ||| ||||||| ||||||| |||  | ||||||||||||||||  |  ||||||||||||||||||    
T  24516670 tttgattgattaaaattcacatgggatccactaaatttagatggaatccacatgatttggtgggacccatgtgaattttaaccaat 24516585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 328 - 432
Target Start/End: Original strand, 47497745 - 47497851
Alignment:
Q  328 atgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaa--gtgtgttaaaat 425  Q
    |||||| |||||||||||  ||| ||||||||| |||||||||  || |||||||||||||||||| |||   ||| | |||||||  |||||||| |||    
T  47497745 atgagacccaccaaatttgtatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaat 47497844  T
Q  426 gtgtgtt 432  Q
    |||||||    
T  47497845 gtgtgtt 47497851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 419
Target Start/End: Complemental strand, 11201385 - 11201296
Alignment:
Q  330 gagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||| ||| |||||||| ||||||||||| |||||||||||  |  |||||||||||||| ||| |||  || ||||||| |||||||||    
T  11201385 gagacccatcaaatttatatgagacccacgtgatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgt 11201296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 419
Target Start/End: Original strand, 26647698 - 26647826
Alignment:
Q  290 atttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaac 389  Q
    ||||||||||| | ||| ||| |||| |||||||||  |||||| | | |||| ||| ||||||||||| | ||||| | || |||||||||||| ||||    
T  26647698 atttttcaacatagtctttttcattggttaaaattcacatgaga-ctatcaaaattatatgagacccacgtaatttgatagaacttatgtgaattctaac 26647796  T
Q  390 caattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||| |||   | |||||||||||||||||    
T  26647797 caatcaaaaatagtgtgttgaaaagtgtgt 26647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 432
Target Start/End: Complemental strand, 18802950 - 18802830
Alignment:
Q  312 attgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaa 411  Q
    |||| ||||||||| |||| ||||| | ||||||| |||  ||| |||| |||||||||  | ||||||||||||||| ||| || | || | | |||||    
T  18802950 attggttaaaattcatatgggatccgcgaaatttatatggaaccaacattatttggtgggacctatgtgaattttaacaaatcaactagagtatattgaa 18802851  T
Q  412 aagtgtgttaaaatgtgtgtt 432  Q
    || ||||||||||| ||||||    
T  18802850 aaatgtgttaaaatatgtgtt 18802830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 316525 - 316466
Alignment:
Q  256 aagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattg 315  Q
    ||||||||||||||  |||| |||||||  | | ||||||||||||||||||||||||||    
T  316525 aagagaaatgctagttacacgcattttaacacacatttttcaacacattctctttgattg 316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 432
Target Start/End: Original strand, 5443539 - 5443680
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 391  Q
    ||||||||||||||| |||||  | ||| |||||  ||  || |||| ||| ||| ||| || |||||| ||||||||||||| ||||||||||||||||    
T  5443539 ttttcaacacattctgtttgaccggttagaattcacataggacccacaaaagttatatgggatccacataatttggtggagct-atgtgaattttaacca 5443637  T
Q  392 attaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtt 432  Q
    || |||   | | |||||||||  |||||||| ||||||||||    
T  5443638 atcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgtt 5443680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 7017140 - 7017222
Alignment:
Q  337 accaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||||| ||| || |||||| ||||||| |  ||||||||||||||||||||| |||  || ||| ||||||| |||||    
T  7017140 accaaatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgt 7017222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 7032498 - 7032580
Alignment:
Q  337 accaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt 419  Q
    |||||||||| ||| || |||||| ||||||| |  ||||||||||||||||||||| |||  || ||| ||||||| |||||    
T  7032498 accaaatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgt 7032580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 641001 - 640932
Alignment:
Q  300 acattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtg 369  Q
    ||||||| |||||||  |||||||||  |||||||| |||||||||| |||  | |||||||||||||||    
T  641001 acattctttttgattcgttaaaattcacatgagatctaccaaatttatatggaatccacatgatttggtg 640932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 420
Target Start/End: Original strand, 46074043 - 46074192
Alignment:
Q  271 aacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgg 370  Q
    |||| |||||||| || | | |||| |||||| | ||||| || ||||||||||   ||| || |||  ||||||| ||| || |||| ||||||| |||    
T  46074043 aacaaacattttaatacacactttttaacacactttctttaatcgattaaaatttacatgggacccattaaatttatatgggatccacgtgatttgatgg 46074142  T
Q  371 agcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgtt 420  Q
      || ||||||||||||||||||||||  || |||||| ||| |||||||    
T  46074143 gactcatgtgaattttaaccaattaaagagagtgtgttaaaatgtgtgtt 46074192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 2417232 - 2417151
Alignment:
Q  288 atatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtgga 371  Q
    |||||||| ||||||||| |||||||| ||||||||||  | ||||  || |||||||| ||| || |||||||||||| ||||    
T  2417232 atattttttaacacattcgctttgattaattaaaattc--acgagactcatcaaatttatatgggatccacatgatttgatgga 2417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 12275784 - 12275728
Alignment:
Q  376 atgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 432  Q
    |||||| |||||||||||| ||  || ||||||| ||||||||||| ||||||||||    
T  12275784 atgtgatttttaaccaattgaagagagtgtgttggaaagtgtgttagaatgtgtgtt 12275728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 40134440 - 40134496
Alignment:
Q  337 accaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaat 393  Q
    |||||||||| ||| ||||||||| |||||||||  |  ||||||||||||||||||    
T  40134440 accaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaat 40134496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 39193 - 39262
Alignment:
Q  255 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattc 325  Q
    |||||| |||||||  ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  39193 taagaggaatgctaataacacacattttaatatatatttttcaacaca-tatctttgattgattaaaattc 39262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 429
Target Start/End: Original strand, 136344 - 136469
Alignment:
Q  306 tctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgt 405  Q
    |||||||||| ||||||||| ||||||  ||| |||||||| ||| | | ||||||||||| |||  |  |||||| ||||||||||| |||  || |||    
T  136344 tctttgattggttaaaattcatatgagtcccatcaaatttatatgggtcacacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgt 136443  T
Q  406 gttgaaaa--gtgtgttaaaatgtgt 429  Q
    ||||||||  ||||||||||||||||    
T  136444 gttgaaaaatgtgtgttaaaatgtgt 136469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 9276 - 9136
Alignment:
Q  292 ttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggt-ggagcttatgtgaattttaacc 390  Q
    ||||||||| | |||||||||||| |||||||||  ||| ||||||| |||||||||||||| |||  |||||| || ||| | ||  |  |||||||||    
T  9276 ttttcaacataatctctttgattggttaaaattcacatgggatccactaaatttacatgagatccatgtgatttagtgggaacctaaat-tattttaacc 9178  T
Q  391 aattaaatcgaatgtgttgaaaagtgtgttaaaatgtgtgtt 432  Q
    ||| |||| || ||| ||  ||||||||||||||||||||||    
T  9177 aatcaaatagagtgttttataaagtgtgttaaaatgtgtgtt 9136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 445
Target Start/End: Original strand, 8251 - 8343
Alignment:
Q  354 cccacatgatttggtggagcttatgtgaattttaaccaattaaatcgaatgtgttgaaaagtgtgt-taaaatgtgtgtttttaccattcctc 445  Q
    ||||||| |||||||||   | |||||||||||| ||||| |||  ||||| |||||||||||||| | |||||| |||| ||| ||||||||    
T  8251 cccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgttaaatgtatgttgttagcattcctc 8343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 445
Target Start/End: Original strand, 200963 - 201121
Alignment:
Q  288 atatttttcaacacattctctttgattgattaaaattcttatgagatccaccaaatttacatgagacccacatgatttggtggagcttatgtgaatttta 387  Q
    |||||||||||||||||||  || |||| |||||||||  ||  || |||||||||| | |  |||||||| |||||| ||||  |  |||||||| |||    
T  200963 atatttttcaacacattcttcttaattggttaaaattcacattggacccaccaaattcata-cagacccacctgatttagtgggacacatgtgaatctta 201061  T
Q  388 accaattaaatcgaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctc 445  Q
    || ||| |||  || |||||||| ||  |||||||||||||||| || ||| ||||||||    
T  201062 acaaatcaaagagagtgtgttgataagtgtgtgttaaaatgtgtattgttagcattcctc 201121  T

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