View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_21 (Length: 419)
Name: NF2504_low_21
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 25 - 403
Target Start/End: Complemental strand, 31947651 - 31947270
Alignment:
| Q |
25 |
attcaatcaacaatagattttcaatattgaaagtaaatgaagtgaaagctgaaatgagcaacaacaagccagagcaaagaaaacgcagtcatatatgctt |
124 |
Q |
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| T |
31947651 |
attcaatcaacaatagattttcaatattgaaagtaaatgaagtgaaagctgaaatgagcaacaacaagccagagcaaagaaaatgcagtcatatatgctt |
31947552 |
T |
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| Q |
125 |
aaatttattcggaaaaatgcagtc------tcaactttattctgaaatatgctttaaccactgtcaatgtcattaagtcattattactcacacaacatgc |
218 |
Q |
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| T |
31947551 |
aaatttattcgcaaaaatgcagtcatttgcttaactttattctgaaatatgctttaaccactgtcaatttcattaagtcattattactcacacaacatgc |
31947452 |
T |
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| Q |
219 |
ttcacatattcaaagcataaagaaaaaagtcacacgcagctcttccaattgaaattctttaagtttttaataaaaacaataaaagaaccttacaggaaga |
318 |
Q |
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| T |
31947451 |
ttcacatattcaaagcataaagaaaaaagtcacacacagctcttccaattgaaattctttaagtttttaataaaaacaataaaagaaccttacaggaaga |
31947352 |
T |
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| Q |
319 |
gatgatgagaaagtggtaaaatcctctatcggttctcctgctgctgcatttagtaaaggaagtcctttcacagcgttgtccaaca |
403 |
Q |
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| T |
31947351 |
gatgatgagaaagtggtaaaatcctctatcggttctcctg---ctgcatttagtaaaggaagtcctttcacagcgttgtccaaca |
31947270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 31962417 - 31962321
Alignment:
| Q |
248 |
tcacacgcagctcttccaattgaaattctttaagttttt-aataaaaacaataaaagaaccttacaggaagagatgatgagaaagtggtaaaatcctct |
345 |
Q |
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| T |
31962417 |
tcacacacagctcttccaattgaaatt--ttatttttttgaataaaaataataataaaaccttacaggaatagatgatgagaaagtaataaaatcctct |
31962321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 31972979 - 31972922
Alignment:
| Q |
39 |
agattttcaatattgaaagtaaatgaagtgaaagctgaaatgagcaacaacaagccag |
96 |
Q |
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| T |
31972979 |
agattttcaatattgaaaataaatgaagtgaaagttcaaataagcaccaataagccag |
31972922 |
T |
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