View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2504_low_22 (Length: 416)
Name: NF2504_low_22
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 40514606 - 40514998
Alignment:
| Q |
14 |
cattctcaacaaatcagattctttataatccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttcacttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40514606 |
cattctcaacaaatcagattctttataatccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttcacttca |
40514705 |
T |
|
| Q |
114 |
gataaatatggtatagtcctaatttgatcattgcttctgcacacattt---gtagtactttgttccaaacgtggttgatgttgttgttgatcagctggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40514706 |
gataaatatggtatagtcctaatttgatcattgcttctacacacatttgtagtagtactttgttccaaacgtggttga---tgttgttgatcagctggtt |
40514802 |
T |
|
| Q |
211 |
ccattacagtaattgtggtttggttggagtttgtgtcatgtactccaagaggc---tgagaaggaggttgagtagaagaagaagtgggtatagtacatag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40514803 |
ccattacagtaattgtggtttggttggagtttgtgtcatgtactccaagaggctgatgagaaggaggttgagt---agaagaagtgggtatagtacatag |
40514899 |
T |
|
| Q |
308 |
ataagaggcaattgtaattaagagagttatcattattaggcacacaagaaataagatgaaatatgccannnnnnnaaactcttcatcatgaatgttcat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
40514900 |
ataagaggcaattgtaattaagagagttatcattattaggcatacaagaaataagatgaaataagccattttcttaaactcttcatcatgaatgttcat |
40514998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 40509283 - 40509350
Alignment:
| Q |
43 |
ccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttcacttca |
113 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
40509283 |
ccatcaagcatatgaagcagcaacaactact---tgaattaatactattgctgttacacaatttgacttca |
40509350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University