View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_23 (Length: 412)
Name: NF2504_low_23
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 43245929 - 43246309
Alignment:
| Q |
19 |
acatgtttactatgaaacatgtaatagttatagaaaaactgcaaatatgaaggnnnnnnn--tagagtatatgttttcaagtattaagaaatat--agca |
114 |
Q |
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| T |
43245929 |
acatgtttactatgaaacatgtaatagttatagaaaaactgcaaatatgaaggaaaaaaaaatagagtatatgttttcaagtattaagaaatatatagca |
43246028 |
T |
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| Q |
115 |
gctcttttatttattccatttcataaacaaccaattacattctttgcttaaataacaataccaagcaaaaacaaatatcgatattatttattattacacc |
214 |
Q |
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| T |
43246029 |
gctcttttatttattccatttcataaacaaccaattacattctttgcttaaataacaataccaagcaaaaacaaatatcgatattatttattattacacc |
43246128 |
T |
|
| Q |
215 |
aagtcaccaattaatcaatgcaaaaatcaaataaattttagtagtggccactttattggtcacactatagctcatcttaatccatatcaaattctacgca |
314 |
Q |
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| T |
43246129 |
aagtcaccaattaatcaatgcaaaaatcaaataaattttagtagtggccactttattggttacactatagctcttcttaatccatatcaaattctacgca |
43246228 |
T |
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| Q |
315 |
tatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactccta |
395 |
Q |
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| T |
43246229 |
tatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactccta |
43246309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 395
Target Start/End: Original strand, 8532429 - 8532727
Alignment:
| Q |
111 |
agcagctcttttatttattccatttcataaacaaccaattacattctttgcttaa-----ataacaataccaagcaaaaacaaatatcgatattatttat |
205 |
Q |
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| T |
8532429 |
agcagctcttttattcattc-atttcataaactaccaattacaaatttttcttaattaatataacaataccaaacaaaaataa-tagcaaatttatttat |
8532526 |
T |
|
| Q |
206 |
tattacaccaagtcaccaattaatcaatgcaaaa----atcaaataaattttagtagtggccactttatt--ggtcacac-tatagct-----catctta |
293 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||| |||| || |||||| |
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| T |
8532527 |
tattacaccaagtcaccaattaatcaacgcaaattaagatcaaataaattttagtagaggctgctttattttggtcacatatata-ctgtatacatcttg |
8532625 |
T |
|
| Q |
294 |
atccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcc |
393 |
Q |
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||| | |||||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
8532626 |
atcggtttcaaattctatgcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactcc |
8532725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 8551391 - 8551493
Alignment:
| Q |
293 |
aatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactc |
392 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
8551391 |
aatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactc |
8551490 |
T |
|
| Q |
393 |
cta |
395 |
Q |
| |
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||| |
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| T |
8551491 |
cta |
8551493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 8540896 - 8540997
Alignment:
| Q |
294 |
atccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcc |
393 |
Q |
| |
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|||||| | |||||||| ||||| |||||||| ||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
8540896 |
atccatttgaaattctaggcatagctgcacatcccataaacacaagaacctttactgtcacacttgttaccacatttcccacaatgcttcttgttactcc |
8540995 |
T |
|
| Q |
394 |
ta |
395 |
Q |
| |
|
|| |
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|
| T |
8540996 |
ta |
8540997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8551272 - 8551353
Alignment:
| Q |
137 |
ataaacaaccaattacattctttgcttaa---ataacaataccaagcaaaaacaaatatcgatattatttattattacacca |
215 |
Q |
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||||||||||||||||| | ||||||||| |||||||||| || ||||||||||| || |||||||||||||||||||| |
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| T |
8551272 |
ataaacaaccaattacaatttttgcttaattaataacaatactaaacaaaaacaaatgtcagtattatttattattacacca |
8551353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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