View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_24 (Length: 407)
Name: NF2504_low_24
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 26791039 - 26790648
Alignment:
| Q |
1 |
agggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagt |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791039 |
agggactgctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagt |
26790940 |
T |
|
| Q |
101 |
ctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790939 |
ctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatga |
26790840 |
T |
|
| Q |
201 |
tgttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790839 |
tgttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatgg |
26790740 |
T |
|
| Q |
301 |
tcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattg |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790739 |
tcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattg |
26790648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 26831417 - 26831263
Alignment:
| Q |
1 |
agggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagt |
100 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26831417 |
agggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagt |
26831318 |
T |
|
| Q |
101 |
ctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaat |
155 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||| |
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|
| T |
26831317 |
ctcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 26817746 - 26817385
Alignment:
| Q |
1 |
agggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagt |
100 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||| |
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| T |
26817746 |
agggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgctagt |
26817647 |
T |
|
| Q |
101 |
ctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaa-tatg |
199 |
Q |
| |
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|| |||||||||||||| |||| || | |||||| |||||||| | || || ||| |||||||| |||||||||| ||||| | | |
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| T |
26817646 |
ctggaaggatggaaattcttatacctttgtaatttagaggttccaat------ctcaaaactctcgtctctttac---atgttatgttaacaaaatttta |
26817556 |
T |
|
| Q |
200 |
atgttacattggttttattttaatatatggtgttcttg---------gtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaaca |
290 |
Q |
| |
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||||||||||| |||||||| |||||| | |||||||| ||||||||||||| ||||| |||||||| || ||||| |||||||||||||| |
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| T |
26817555 |
atgttacattgattttatttgaatataagttgttcttgatatatgatctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaaca |
26817456 |
T |
|
| Q |
291 |
acatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaa |
361 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || |||||||| | |||||||||| | | ||||||||||| |
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|
| T |
26817455 |
acatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaa |
26817385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26784713 - 26784554
Alignment:
| Q |
1 |
agggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||| | | |||||||| ||| |
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|
| T |
26784713 |
agggactgcgggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacgtgcaagt |
26784614 |
T |
|
| Q |
101 |
ctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat |
160 |
Q |
| |
|
||| |||||||||||||| |||| ||||||||| |||||||||||||| |||||| |||| |
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|
| T |
26784613 |
ctcgaaggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat |
26784554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 26831152 - 26831030
Alignment:
| Q |
239 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
338 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || |
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|
| T |
26831152 |
tataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaat |
26831053 |
T |
|
| Q |
339 |
ggagattgtcacaagcaaggtaa |
361 |
Q |
| |
|
|||||||||||||| |||||||| |
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| T |
26831052 |
ggagattgtcacaaacaaggtaa |
26831030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 26784431 - 26784309
Alignment:
| Q |
239 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
338 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| |||| |
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| T |
26784431 |
tataggttaaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattat |
26784332 |
T |
|
| Q |
339 |
ggagattgtcacaagcaaggtaa |
361 |
Q |
| |
|
||||||| |||||| |||||||| |
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|
| T |
26784331 |
ggagattctcacaaacaaggtaa |
26784309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 41919713 - 41919835
Alignment:
| Q |
1 |
agggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagt |
100 |
Q |
| |
|
||||||||| || || |||||||||| |||| |||| || |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| | |||||| |
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|
| T |
41919713 |
agggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagctagt |
41919812 |
T |
|
| Q |
101 |
ctcaaaggatggaaattcctata |
123 |
Q |
| |
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|||||||| ||||| ||| |||| |
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|
| T |
41919813 |
ctcaaagggtggaagttcttata |
41919835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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