View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_25 (Length: 396)
Name: NF2504_low_25
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 36529292 - 36529678
Alignment:
| Q |
1 |
atcaatgttcagcatggttgcttgtccttcaatcaatttctttagtgctatagcatatcatcattcattcattccatgcaacaatatcagaaatgaaagc |
100 |
Q |
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| T |
36529292 |
atcaatgttcagcatggttgcttgtccttcaatcaatttctttagtgctatagcatatcatcat----tcattccatgcaacaatatcagaaatgaaagc |
36529387 |
T |
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| Q |
101 |
ccccaaatttccaaccactaagcatatctcttgtattcctgaacttcatccttggccatgttttggacctcagacttttctgaacctttatgccacatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36529388 |
ccccaaatttccaaccactaagcatatctcttgtattcctgaacttcatccttggccatgttttggacctcagacttttctgaacctttatgccatatct |
36529487 |
T |
|
| Q |
201 |
gaaaacaaaagttcaggcttctcaagataagtatttatgtgcctcatttcaatcagaaatttaaccacaagctatgtctcttttcagaataaacaatact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36529488 |
gaaaacaaaagttcaggcttctcaagataagtatttatgtgcctcatttcaatcagaaatttaaccacaagctatgtctcttttcagaataaacaatact |
36529587 |
T |
|
| Q |
301 |
ctatgaatttaagttatatctaattagagttaagtatgtttatagtttttataaattacactttttagtttggtccatataaaaaattcat |
391 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36529588 |
ctatgagtttaagttatatctaattagagttaagtatgtttatagtttttataaattacactttttagtttggtccatataaaaaattcat |
36529678 |
T |
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