View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_3 (Length: 624)
Name: NF2504_low_3
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 221 - 603
Target Start/End: Complemental strand, 6889024 - 6888653
Alignment:
| Q |
221 |
taagtattgaaaattaaaaagcgaagttaggttttcaaaatgcattgcgcaattggcttctgaattggagttgataccttagctttgtcttgaaactctg |
320 |
Q |
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| T |
6889024 |
taagtattgaaaattaaaaagcgaagataggttttcaaaatgcattgcgcaattggcttctgaaatggagttgataccttagctttgtcttgaaactctg |
6888925 |
T |
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| Q |
321 |
gtcctacaaagttacaagtaggggaacaagggttttgaattgaatgaaaatggaacagaaatcatattcagttcactacgaactagattaaaaaagaaaa |
420 |
Q |
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| T |
6888924 |
gtcctacaaagttacaagtagcggaacaagggttttgaattgaatgaaaatggaacagaaatcatattcagttcactacgaactag-------------- |
6888839 |
T |
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| Q |
421 |
cccgaatattaattgggaacacgttgaacatatcaaaactaagtaagttaaaaacagagaaaatggtaagaagacacttaccgttactactgggaattat |
520 |
Q |
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| T |
6888838 |
cccgaatattaattgggaacacgttgaacatatcaaaactaagtaagttaaaaacagagaaaatggtaagaagacacttaccgttactactgggaattat |
6888739 |
T |
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| Q |
521 |
agacagcaacgttggaatcagatagagaagaaacgttgttgaatagtgttg---agaagaataaacgaaagagagtttttgaaaga |
603 |
Q |
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| T |
6888738 |
agacagcaacgttggaatcagatagagaagaaacgttgttgaatagtgttgagaagaagaataaacgaaagagggtttttgaaaga |
6888653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 25255598 - 25255418
Alignment:
| Q |
18 |
attacagtaaagttgcagtcgcaagacataaaaaaccttaatgttttggaaataactgtggtcaagaaactgtttttgaaatactagcgaacaagttaat |
117 |
Q |
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| T |
25255598 |
attacggtaaagttgcagtcgcaagacataaaaaaccttaatgttttggaaataactgtggtcaagaaactgtttttgaaatactagcgaacaagttaat |
25255499 |
T |
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| Q |
118 |
ttcaaattataaaaaacttgtttcttagaagattgatggctatgtattcatagggtccaatactccaatgaattgcagtga |
198 |
Q |
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| T |
25255498 |
ttcaaattataaaaaacttgtttcttagaagattgatggctatgtattcatagggtccaatactccaatgaattgcagtga |
25255418 |
T |
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