View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_30 (Length: 361)

Name: NF2504_low_30
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_30
NF2504_low_30
[»] chr3 (8 HSPs)
chr3 (159-339)||(19404860-19405052)
chr3 (171-284)||(18018798-18018912)
chr3 (159-268)||(19417104-19417214)
chr3 (213-339)||(17946059-17946196)
chr3 (65-129)||(19405054-19405118)
chr3 (65-134)||(17947532-17947601)
chr3 (81-124)||(18018956-18018999)
chr3 (65-115)||(19417233-19417287)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 159 - 339
Target Start/End: Complemental strand, 19405052 - 19404860
Alignment:
Q  159 gatatgatatgatatatttattatatctagagttgtcaaattggtcacaaattccaaatcctacacttattaagaatgaggtagaaactttcaagcttct 258  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  19405052 gatatgatatgaaatatttattatatctagagttgtcaaataggtcacaaattccaaatcttacactaattaagaataaggtagaaactttcaagcttct 19404953  T
Q  259 ctaaatgtttattttattaatttcttgaaat-----------atttgcaatggttatcatctc-tttttgttaatttaagttataagattgta 339  Q
     |||||| || ||||||||||||||||||||           || |||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  19404952 ataaatgcttcttttattaatttcttgaaatactaattttggatatgcagtggttgtcatctcttttttgttaatttaagttataagattgta 19404860  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 18018912 - 18018798
Alignment:
Q  171 tatatttattat-atctagagttgtcaaattggtcacaaattccaaatcctacacttattaagaatgaggtagaaactttcaagcttctctaaatgttta 269  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |||||||||     
T  18018912 tatatttattattatctagagttgtcaaattggtcacaaattccaaatcctacagtcattaagaataaggtagaaactttcaagcttctataaatgtttc 18018813  T
Q  270 ttttattaatttctt 284  Q
    |||||||||||||||    
T  18018812 ttttattaatttctt 18018798  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 19417214 - 19417104
Alignment:
Q  159 gatatgatatgatatatttattat-atctagagttgtcaaattggtcacaaattccaaatcctacacttattaagaatgaggtagaaactttcaagcttc 257  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19417214 gatatgatatgatatatttattattatctacagttgtcaaattggccacaaattccaaatcttacacttattaagaatgaggtagaaactttcaagcttc 19417115  T
Q  258 tctaaatgttt 268  Q
    | |||||||||    
T  19417114 tataaatgttt 19417104  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 339
Target Start/End: Complemental strand, 17946196 - 17946059
Alignment:
Q  213 caaatcctacacttattaagaatgaggtagaaactttcaagcttctctaaatgtttattttattaatttcttgaaat-----------atttgcaatggt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||           || |||| ||||    
T  17946196 caaatcctacacttattaagaatgaggtagaaactttcaagcttctataaatgtttcttttattaatttcttgaaatactatttgtggatgtgcagtggt 17946097  T
Q  302 tatcatctctttttgttaatttaagttataagattgta 339  Q
    | ||||||||| ||||||||||||||||||||||||||    
T  17946096 tgtcatctcttgttgttaatttaagttataagattgta 17946059  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 19405118 - 19405054
Alignment:
Q  65 atgagaaaatgttaactagcaatagtgattgactttaggactcatttggaggccataataagaga 129  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19405118 atgagaaaatgttaactagcaatagtgatcgactttaggactcatttggaggccataataagaga 19405054  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 17947601 - 17947532
Alignment:
Q  65 atgagaaaatgttaactagcaatagtgattgactttaggactcatttggaggccataataagagagatga 134  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| ||||    
T  17947601 atgacaaaatgttaaccagcaatagtgattgactttaggactcatttagaagccaaaataagagatatga 17947532  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 18018999 - 18018956
Alignment:
Q  81 tagcaatagtgattgactttaggactcatttggaggccataata 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18018999 tagcaatagtgattgactttaggactcatttggaggccataata 18018956  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 19417287 - 19417233
Alignment:
Q  65 atgagaaaatgttaactagcaatagtg----attgactttaggactcatttggag 115  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  19417287 atgagaaaatgttaactagcaatagtgtttaattgactttaggactcatttggag 19417233  T

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