View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_31 (Length: 354)
Name: NF2504_low_31
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 40193683 - 40193875
Alignment:
| Q |
1 |
cataattgatcggtcgatttgttcttatgggttgaccttcttacttaagtttcaaattgttaatctaacaatattaaacttgttctttttgag--tgaga |
98 |
Q |
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| T |
40193683 |
cataattgatcggtcgatctgttcttatgggttgatcttcttacttaagtttcaaattgttaatctaacaatattaaacttgttctttttgagagtgaga |
40193782 |
T |
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| Q |
99 |
tattaggcttaagtcttgtggatgaaaaaagtgattaagattataacctcacaacaaagtgattaaggatttgtttgataaaaatatagataa |
191 |
Q |
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| T |
40193783 |
tattaggcttaagtcttgtggatgaaaaaattgattaagattataacctcacaacaaagtgattaaggatttgtttgataaaaatatagataa |
40193875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 40193894 - 40194047
Alignment:
| Q |
184 |
atagataagtttataattgatcgcggataaattagctgacaatcgataatgaataaactagttgattgagtttaaaatgttatgtaaaattggcttc--n |
281 |
Q |
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| T |
40193894 |
atagataagtttataattgatcgcgaataaattagctgaccatcgataatgaataaactagttgattgagtttaaaatgttatgtaaaattggcttcttt |
40193993 |
T |
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| Q |
282 |
nnnnnnncaactgataccaagggaagaattgaataaaaaatgataagaggtaag |
335 |
Q |
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| T |
40193994 |
tttttttcaactgataccaagggaagaattgaataaaaaatgataagaggtaag |
40194047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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