View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_36 (Length: 332)
Name: NF2504_low_36
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 39601084 - 39601399
Alignment:
| Q |
1 |
caaggggttgagttactaggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacataatttccacccatcagcatacaatt |
100 |
Q |
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| T |
39601084 |
caaggggttgagttactaggaaagacaatagaagaaaagggtcttgtggaacaatggttagaagttgaagcacataatttccacccatcagcatacaatt |
39601183 |
T |
|
| Q |
101 |
tgacctgtcatgttttgtttccttcactactagttgacggcactccagatccaaaggtaattgaagagagtgaagcaaagttggtgaaggtgttgaacat |
200 |
Q |
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|||||||||||||||||| |||| ||||||||| || | || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
39601184 |
tgacctgtcatgttttgtgtcctacactactaggtggcagctctccagatccaaaggtaattgaagaaagtgaagcaaagttggtgaaggtgttcaacat |
39601283 |
T |
|
| Q |
201 |
ttatgaagagaggctttcaaagagcaagtatttagctggtgattttttcagccttgctgatataagtcaccttccatttactgattatattgttaacaat |
300 |
Q |
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||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
39601284 |
ttatgaagagaggctatcaaagaacaagtatttggctggtgattttttcagccttgctgatataagtcaccttccatttatggattacgttgttaacaat |
39601383 |
T |
|
| Q |
301 |
atggggaaagattatt |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
39601384 |
atggggaaagattatt |
39601399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 39611905 - 39612220
Alignment:
| Q |
1 |
caaggggttgagttactaggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacataatttccacccatcagcatacaatt |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||| ||||| | |
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| T |
39611905 |
caaggggttgagttgctaggaaagacaatagaagaaaagggtcttgtggaacaatggttagaagttgaagcacacaactttaacccaccagcttacaact |
39612004 |
T |
|
| Q |
101 |
tgacctgtcatgttttgtttccttcactactagttgacggcactccagatccaaaggtaattgaagagagtgaagcaaagttggtgaaggtgttgaacat |
200 |
Q |
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|| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612005 |
tggtcattcatgttttgtttccttcactactggttgacggcactccagatccaaaggtaattgaagagagtgaagcaaagttggtgaaggtgttgaacat |
39612104 |
T |
|
| Q |
201 |
ttatgaagagaggctttcaaagagcaagtatttagctggtgattttttcagccttgctgatataagtcaccttccatttactgattatattgttaacaat |
300 |
Q |
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|||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612105 |
ttatgaagagagactatcaaagaacaagtatttggctggtgattttttcagccttgctgatataagtcaccttccatttactgattatattgttaacaat |
39612204 |
T |
|
| Q |
301 |
atggggaaagattatt |
316 |
Q |
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|||||||||||||||| |
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| T |
39612205 |
atggggaaagattatt |
39612220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 34774287 - 34774411
Alignment:
| Q |
66 |
tgaagcacataatttccacccatcagcatacaattt-gacctgtcatgttttgtttccttcactactagttgacggcactccagatccaaaggtaattga |
164 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||| ||||| |||||||||| |||||||||||||| || ||||| |||||| || ||||||||||| |
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| T |
34774287 |
tgaagcacatatcttccacccaccagcatacaattttgacctatcatgttttgcgtccttcactactagctggcggcaatccagagcctaaggtaattga |
34774386 |
T |
|
| Q |
165 |
agagagtgaagcaaagttggtgaag |
189 |
Q |
| |
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| T |
34774387 |
agagagtgaagcaaagttggtgaag |
34774411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 34774409 - 34774496
Alignment:
| Q |
226 |
aagtatttagctggtgattttttcagccttgctgatataagtcaccttccatttactgattatattgttaacaatatggggaaagatt |
313 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||| |||| |
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| T |
34774409 |
aagtatttggctggtgattttttcagccttgctgatatgagtcaccttccatttatggattacgttgttaacaatatgaggaaggatt |
34774496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 17647124 - 17647192
Alignment:
| Q |
19 |
ggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacataatttccaccca |
87 |
Q |
| |
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||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| ||| ||||| |
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| T |
17647124 |
ggaaagacaatagaagaaaggggtcttgtggagcaatggctagaagttgaagcacataacttcaaccca |
17647192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 17647266 - 17647362
Alignment:
| Q |
164 |
aagagagtgaagcaaagttggtgaaggtgttgaacatttatgaagagaggctttcaaagagcaagtatttagctggtgattttttcagccttgctga |
260 |
Q |
| |
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| T |
17647266 |
aagagagtgaagaaaagcttggaaaggtgttggatatttatgaagagaggctatcaaagactaagtacttggctggtgatttctttagccttgctga |
17647362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 17572885 - 17572784
Alignment:
| Q |
160 |
attgaagagagtgaagcaaagttggtgaaggtgttgaacatttatgaagagaggctttcaaagagcaagtatttagctggtgattttttcagccttgctg |
259 |
Q |
| |
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|||||||||||||| | |||| || ||| |||||| | |||||||| |||||||| ||||||| |||||| || ||||||||||| || || ||||||| |
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| T |
17572885 |
attgaagagagtgatgaaaagctgaagaaagtgttggatatttatgaggagaggctctcaaagaccaagtacttggctggtgatttctttagtcttgctg |
17572786 |
T |
|
| Q |
260 |
at |
261 |
Q |
| |
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|| |
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| T |
17572785 |
at |
17572784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 17573025 - 17572955
Alignment:
| Q |
17 |
taggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacataatttccaccca |
87 |
Q |
| |
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|||||||||| ||||||||| ||| ||||||||||||||| | ||||| ||||||||||| || |||||| |
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| T |
17573025 |
taggaaagacggtagaagaaaggggtcttgtggaacaatggcttgaagtggaagcacataactttcaccca |
17572955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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