View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_38 (Length: 328)
Name: NF2504_low_38
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 11721040 - 11720879
Alignment:
| Q |
132 |
aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggcttgcaaccaacacannnnnnnnnnatagatttataagtggtacgtatgc |
231 |
Q |
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| T |
11721040 |
aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggaatgcaaccaaca------ttttctatagatttat-----gtacgtatgc |
11720952 |
T |
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| Q |
232 |
cttaatgcaaccccacgtacaaattcaatataaatagtccttaatacgatgccaatattcatccacaaataccacaa |
308 |
Q |
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| T |
11720951 |
----atgcaaccccacgtacaaattcaatataaataggccttaatacgatgccaatattcatccacaaataccacaa |
11720879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 11689907 - 11690004
Alignment:
| Q |
48 |
attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattcttattaccatttcataagatgaccatttc |
145 |
Q |
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| T |
11689907 |
attaaacaattaagattatttagtgaaggactagccggatggcagcacataactttagcttattgattcttattaccatttcacaagatgaccatttc |
11690004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 11690023 - 11690085
Alignment:
| Q |
132 |
aagatgaccatttcatttttaagttaggacggcatatttgtgattgtgggcttgcaaccaaca |
194 |
Q |
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| T |
11690023 |
aagatgatcatttcatttttaagttaggacggcatatttgtgattgtgggcatgcaaccaaca |
11690085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 11721151 - 11721059
Alignment:
| Q |
48 |
attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattcttattaccatttcataagatgaccatttc |
145 |
Q |
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| T |
11721151 |
attaatcaattaagattatttagtgaaggactagccggatggcagcacgtaaa-----gttattgattcttattaccatttcacaagatgaccatttc |
11721059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 11730265 - 11730133
Alignment:
| Q |
48 |
attaatcaatgaagattatttagtgaaggagtagccgaatggcagcacataaaattagcttattgattctta---ttaccatttcataagatgaccattt |
144 |
Q |
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| T |
11730265 |
attaatcaattaagattatttagtgac----tagccgaatgacagtacatcacattaacatattaattcttacagtcaccatttcataagatgaccattt |
11730170 |
T |
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| Q |
145 |
catttttaagttaggacggcatatttgtgattgtggg |
181 |
Q |
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| T |
11730169 |
catttttttgttaggacggcatatttgtgcttgtggg |
11730133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 11687254 - 11687305
Alignment:
| Q |
122 |
accatttcataagatgaccatttcatttttaagttaggacggcatatttgtg |
173 |
Q |
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| T |
11687254 |
accatttcataagatgaccatttcatttttttgttaggacggcatatttgtg |
11687305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 11672829 - 11672778
Alignment:
| Q |
122 |
accatttcataagatgaccatttcatttttaagttaggacggcatatttgtg |
173 |
Q |
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| T |
11672829 |
accatttcaaaagatgaccatttcagttttcacttaggacggcatatttgtg |
11672778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 11712158 - 11712215
Alignment:
| Q |
247 |
cgtacaaattcaatataaatagtccttaatacgatgccaatattcatccacaaatacc |
304 |
Q |
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| T |
11712158 |
cgtacaaattccatatatataagctttaatacgaagccaatattcatccacaaatacc |
11712215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 11730119 - 11730041
Alignment:
| Q |
233 |
ttaatgcaaccccacgtacaaattcaatataa----atagtccttaatacgatgccaatattcatcc-acaaataccac |
306 |
Q |
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| T |
11730119 |
ttaatgcaatgccaagtacaaattcaatataattaaataggctttaatacgacgccaatattcatccaacaaataccac |
11730041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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