View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_4 (Length: 624)
Name: NF2504_low_4
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Complemental strand, 45409386 - 45408855
Alignment:
| Q |
7 |
gtgagatgaatttataattgtccaaaagtaatttcaggggtagtttgaaatttaagacaatagacacgaaatgaatctagatctatgatatgattnnnnn |
106 |
Q |
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| T |
45409386 |
gtgatatgaatttataattgtccaaaagtaatttcaggggtagtttgaaatttaagacaatagacacgaaatgaatctagatctatgatatgattaaaaa |
45409287 |
T |
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| Q |
107 |
nnnnnnnnnnnnngctaagtagaggttgttaaagaggtgagcaaagggaagctctgtctaaactattaagcacgtgtaaggctaatcactctattatcta |
206 |
Q |
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| T |
45409286 |
ataaaaataaaaagctaagtagaggttgttaaagaggtgagcaaagggaagctctgtctaaactattaagcacgtgtaaggctaatcactctattatcta |
45409187 |
T |
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| Q |
207 |
ccaccgacagtgtttatgggaccttaatcacggattggattagtagcatttgaaatggttaagctagcataaaccttaaggaaggtatcatatgctaaat |
306 |
Q |
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| T |
45409186 |
ccaccgacagtgtttatgggac-ttaatcacggattggattggtagcatttgaaatggttaagctagcataaaccttaaggaaggtatcatatgctaaat |
45409088 |
T |
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| Q |
307 |
acacaatagagtagaacacaatactaataatgagtgttcaatattattttttgaacctttttccagttgtatgtgtcaattctagatagctgacaatctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45409087 |
acacaatagagtagaacacaatactaataatgagtgttcaatattattttttgaacctttttccagttgtatgtgtcaattctagatagctgacaatctt |
45408988 |
T |
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| Q |
407 |
acctctcaagtgaagcttttgctctgtatatggtactctagtatattaccacttagcatagctcaaccatttctatgcaaattacatacatgctcacctg |
506 |
Q |
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| T |
45408987 |
acctctcaagtgaagcttttgctctgtatatggtactctagtatattaccacttagcatagctcaaccacttctatgcaaattacatacatgctcacctg |
45408888 |
T |
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| Q |
507 |
tattctctcttaattttgtttacttacatttat |
539 |
Q |
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| T |
45408887 |
tattctctcttaattttgtttacttacatttat |
45408855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 535 - 616
Target Start/End: Complemental strand, 45408826 - 45408748
Alignment:
| Q |
535 |
tttatctgtacctagtgatcagttttgttagacttgtatttgtttgcatgaaattgtacatagtaacaaagggtactagttc |
616 |
Q |
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| T |
45408826 |
tttatttgtacctagtga---gttttgttagacttgtatttgtttgcatggaattgtacatagtaacaaagggtactagttc |
45408748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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