View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_40 (Length: 321)
Name: NF2504_low_40
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 2705914 - 2706199
Alignment:
| Q |
19 |
cgcaacataaagaattttgaagtctttgcgaccggattgcaagtggggttacatttgtctatctatgattttatattgggtctgcaaccaaaattgtggt |
118 |
Q |
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| T |
2705914 |
cgcaacataaagaattttgaagtctttacgaccggattgcaagtggggttacatttgtctatctatggttttatattgggtctgcaaccacaattgtggt |
2706013 |
T |
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| Q |
119 |
cgcaacataaaaactttcaagtctttacaactcgattgcaactgcaattgaggccgcatcagcagtatttgttcacgttttcacaatatgaagacgaaac |
218 |
Q |
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| T |
2706014 |
cgcaacataaaaactttcaagtctttacaactcgattgcaactgcaatggaggccgcatcagcagtatttgttcacgttttcacaatatgaagacgaaac |
2706113 |
T |
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| Q |
219 |
cacaatatagaactatgagtttaacctgtaatttataaaatttctaaccaatttcataatagatttatttcttaatctatcgtcct |
304 |
Q |
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| T |
2706114 |
cacaatatagaactaggagtttaacctgtaatttataaaatttctaaccaattttattatagatttatttcttaatctatcgtcct |
2706199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 2696984 - 2697241
Alignment:
| Q |
19 |
cgcaacataaagaattttgaagtctttgcgaccggattgcaagtggggttacat--ttgtctatctatgattttatattgggtctgcaaccaaaattgtg |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| || ||||| || |||||||| |||| |||||||| ||| | |||||| ||| || |
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| T |
2696984 |
cgcaacataaagaattttgaagtctttgcgacgagattgcaaatgtggttatatatttgtctatttatggttttatatcaggtttacaaccacgattatg |
2697083 |
T |
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| Q |
117 |
gtcgcaacataaaaactttcaagtctttacaactcgattgcaactgcaattgaggccgcatcagcagtatttgttcacgttttcacaatatgaagacgaa |
216 |
Q |
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| T |
2697084 |
gttgcaacataaatactttgaaacctttaaaaattgatcgctacagcaattgaggctacatcagtagcatttgttcacgttttcacaatatgaagtcgaa |
2697183 |
T |
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| Q |
217 |
accacaatatagaactatgagt---ttaacctgtaatttataaaatttctaaccaatt |
271 |
Q |
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|||||||| ||||||||| ||| ||||||| || ||||||||||||||||| |||| |
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| T |
2697184 |
accacaatttagaactatcagtctattaacctttattttataaaatttctaacaaatt |
2697241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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