View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2504_low_41 (Length: 311)
Name: NF2504_low_41
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1355264 - 1354971
Alignment:
| Q |
1 |
tttcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattcc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1355264 |
tttcaataacagaaccagaaccacaatgactcatacatccaccaattgctccatgagctaagatcttaagctgaggtgcccatgtcttccaaacaattcc |
1355165 |
T |
|
| Q |
101 |
gcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaatt |
200 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1355164 |
gcgttctttcgtcctttcctcgaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaagacaacccagaaagctcaatt |
1355065 |
T |
|
| Q |
201 |
ccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1355064 |
ccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
1354971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 1362148 - 1361857
Alignment:
| Q |
3 |
tcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1362148 |
tcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgc |
1362049 |
T |
|
| Q |
103 |
gttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
1362048 |
gttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattcc |
1361949 |
T |
|
| Q |
203 |
ataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
|| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1361948 |
atgagccaactcagttaaatcattctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
1361857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 20492933 - 20492642
Alignment:
| Q |
3 |
tcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgc |
102 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||| |||||||| ||||| |
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|
| T |
20492933 |
tcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatctttagctgtggtgcccatgttttccaaacgattccat |
20492834 |
T |
|
| Q |
103 |
gttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattcc |
202 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || || ||||||| |||||||||||| |||| ||| |||||||||| |
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|
| T |
20492833 |
attcttttgttctttcttcaaatccttcgggtaattcaagtgtaccttctttaaggtttttcaaagcccaaaagaaaggtaacctagattgctcaattcc |
20492734 |
T |
|
| Q |
203 |
ataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
|| ||| |||||||||| ||||| ||| | ||||| ||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
20492733 |
atgagctaactcagttagatcttgttgatttaactttaactcgctcccgaatccaatgtaaacaaccgaagatgattcttttgaatccaacc |
20492642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 29954798 - 29954507
Alignment:
| Q |
3 |
tcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgc |
102 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||| | |
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|
| T |
29954798 |
tcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatcttaagttgaggtgcccatgttttccaaacgattccac |
29954699 |
T |
|
| Q |
103 |
gttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattcc |
202 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
29954698 |
attcttttgttctttcctcaaatcctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggcaacctagaaagctcaattcc |
29954599 |
T |
|
| Q |
203 |
ataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
|| || |||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29954598 |
atgcgctaactcagttagatcttgttggcttaacttcaactcgctcccaaatccaatgtaaacaacagaagatgattcttttgaatccaacc |
29954507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 51369672 - 51369946
Alignment:
| Q |
20 |
accacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| | ||| ||| |||| || |||||||||||||| |||||||| ||||||||| |
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|
| T |
51369672 |
accacagtgactcatacatccaccaattgatggatgagctaagattttgatctggggtacccaggttttccaaacaattccacgttcttttgttctttcc |
51369771 |
T |
|
| Q |
120 |
tcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagtta |
219 |
Q |
| |
|
|| ||||||| |||||||||| | ||| ||||| ||| ||||||| |||||||||||| ||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
51369772 |
tcgaatccttgaggtaattcagatacaccgtctttacgatctttcaaagcccaaaagaaaggtaacccagaaagttcaattccatgagctaactcagtta |
51369871 |
T |
|
| Q |
220 |
aatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
|||||| ||| ||||| |||| || ||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
51369872 |
aatcttgttgatctaactttgactcgcttccaaatccaatgtaaacaacagaagatgattcttttgagtccaacc |
51369946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 11532111 - 11531820
Alignment:
| Q |
3 |
tcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgc |
102 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||| |||| |||||| |||||||| ||||| || ||||||||||| |||||||||||||| | |
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|
| T |
11532111 |
tcaatgactgaacctgaaccacagtgactcatacatccaccgattgatccatgtgctaagatcttaagttgtggtgcccatgttttccaaacaattccac |
11532012 |
T |
|
| Q |
103 |
gttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattcc |
202 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
11532011 |
gttcttttgttctttcctcaaattctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggcaacctagaaagctcaattcc |
11531912 |
T |
|
| Q |
203 |
ataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
|| ||| |||||| ||| ||||| ||||| | ||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
11531911 |
atgagctaactcaattagatcttgttgacttattttcgtctcgctcccaaatccaatgtaaacaacagaagacgattcttttgaatccaacc |
11531820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 12846776 - 12846488
Alignment:
| Q |
3 |
tcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgc |
102 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||| || |||||||||||||| | |||||| |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
12846776 |
tcaatgactgaacctgaaccacaatgactcatacaccccccaattgctccatgggataagatcttaagctggggtgcccatgttttccaaacaattccac |
12846677 |
T |
|
| Q |
103 |
gttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattcc |
202 |
Q |
| |
|
||||||| |||| || || ||||||| |||||| ||||||||||||| ||| || || ||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
12846676 |
gttctttggttcgatcttcgaatcctttaggtaactcaagtgtacccttttttaggtttttcaaagcccaaaagaaaggtaacctagaaagctcaattcc |
12846577 |
T |
|
| Q |
203 |
ataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatcca |
291 |
Q |
| |
|
|| ||| || || |||| ||||| || | ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12846576 |
atgagctaattcggttagatctttttgcgttaacctcaactcgctcccaaatccaatgtaaacaacggaagatgattctcttgaatcca |
12846488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 14589204 - 14588930
Alignment:
| Q |
20 |
accacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcc |
119 |
Q |
| |
|
|||||| ||| ||||||| |||||||||| |||||||| |||||| |||| ||| ||| |||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
14589204 |
accacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcc |
14589105 |
T |
|
| Q |
120 |
tcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagtta |
219 |
Q |
| |
|
|| || |||| ||| ||||||||| ||||||||| |||| || |||| ||||||||| || |||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
14589104 |
tcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaacggtaacctagaaagctcaattccatgagctaactcagtta |
14589005 |
T |
|
| Q |
220 |
aatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
||||| ||||| |||||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14589004 |
tatcttgttgacttaacttcgactcgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaacc |
14588930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 14622862 - 14622588
Alignment:
| Q |
20 |
accacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcc |
119 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||| | |||||| |||||| |||| ||| |||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
14622862 |
accacaatgagtcatacaaccactaattgattcatgagttaagatcttaaactggggtgcccaagttttccaaacaattccgcgttcttttgttctttcc |
14622763 |
T |
|
| Q |
120 |
tcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagtta |
219 |
Q |
| |
|
|| || |||| ||| ||||||||| ||||||||| |||| || |||| ||||||||| || |||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
14622762 |
tcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaacggtaacctagaaagctcaattccatgagctaactcagtta |
14622663 |
T |
|
| Q |
220 |
aatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaacc |
294 |
Q |
| |
|
||||| ||||| |||||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14622662 |
tatcttgttgacttaacttcgactcgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaacc |
14622588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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