View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_42 (Length: 308)

Name: NF2504_low_42
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_42
NF2504_low_42
[»] chr7 (11 HSPs)
chr7 (1-175)||(10691127-10691297)
chr7 (167-308)||(10691704-10691849)
chr7 (1-69)||(11081530-11081599)
chr7 (12-59)||(13290682-13290729)
chr7 (78-185)||(26210630-26210737)
chr7 (1-69)||(45366551-45366619)
chr7 (78-120)||(6048960-6049002)
chr7 (78-120)||(12310173-12310215)
chr7 (1-69)||(44016864-44016934)
chr7 (1-69)||(6067404-6067473)
chr7 (13-69)||(6332256-6332312)
[»] chr1 (13 HSPs)
chr1 (3-187)||(14352970-14353153)
chr1 (3-186)||(13785364-13785548)
chr1 (18-110)||(8213696-8213788)
chr1 (1-120)||(49959050-49959170)
chr1 (1-57)||(32261046-32261103)
chr1 (4-120)||(37990682-37990798)
chr1 (1-59)||(26332770-26332828)
chr1 (78-188)||(30738723-30738831)
chr1 (1-69)||(28279278-28279347)
chr1 (1-64)||(27916508-27916572)
chr1 (1-68)||(46783053-46783121)
chr1 (1-69)||(3091309-3091379)
chr1 (143-204)||(13125536-13125596)
[»] chr8 (11 HSPs)
chr8 (1-186)||(13985172-13985356)
chr8 (18-186)||(33839015-33839181)
chr8 (1-112)||(13985978-13986090)
chr8 (127-190)||(33020992-33021055)
chr8 (1-69)||(2267226-2267296)
chr8 (34-120)||(11701114-11701199)
chr8 (79-120)||(25684626-25684668)
chr8 (1-69)||(30423121-30423191)
chr8 (1-58)||(31573934-31573992)
chr8 (79-203)||(17847661-17847783)
chr8 (148-204)||(31035322-31035376)
[»] chr6 (12 HSPs)
chr6 (1-186)||(17904442-17904629)
chr6 (4-204)||(7542459-7542656)
chr6 (3-120)||(3833315-3833432)
chr6 (1-69)||(24542877-24542945)
chr6 (1-69)||(22858151-22858220)
chr6 (2-69)||(20526855-20526923)
chr6 (18-59)||(4595057-4595098)
chr6 (267-300)||(17933419-17933452)
chr6 (147-204)||(25078634-25078690)
chr6 (103-204)||(28037806-28037905)
chr6 (1-66)||(17012088-17012155)
chr6 (13-65)||(25078758-25078810)
[»] chr2 (16 HSPs)
chr2 (6-187)||(43482946-43483128)
chr2 (3-175)||(26345585-26345757)
chr2 (1-181)||(34575207-34575388)
chr2 (1-186)||(41303125-41303311)
chr2 (3-119)||(10942671-10942788)
chr2 (3-119)||(10948540-10948657)
chr2 (67-188)||(17921742-17921863)
chr2 (18-119)||(30720771-30720872)
chr2 (1-69)||(30261976-30262044)
chr2 (22-112)||(7502918-7503008)
chr2 (3-161)||(27248018-27248179)
chr2 (1-69)||(43139364-43139433)
chr2 (41-204)||(15693921-15694083)
chr2 (1-69)||(41304590-41304659)
chr2 (99-204)||(27136201-27136304)
chr2 (1-69)||(33603905-33603973)
[»] chr3 (9 HSPs)
chr3 (1-161)||(11066573-11066734)
chr3 (1-186)||(23941738-23941930)
chr3 (1-90)||(11072929-11073018)
chr3 (1-69)||(15823813-15823881)
chr3 (1-69)||(13419873-13419942)
chr3 (127-190)||(42297751-42297814)
chr3 (1-59)||(561981-562041)
chr3 (1-69)||(46966851-46966920)
chr3 (114-205)||(46966724-46966813)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-190)||(57518-57710)
[»] chr4 (13 HSPs)
chr4 (3-204)||(54906641-54906845)
chr4 (1-69)||(32274105-32274173)
chr4 (3-161)||(5516362-5516521)
chr4 (1-69)||(10112935-10113004)
chr4 (1-69)||(47566402-47566472)
chr4 (12-204)||(3982253-3982438)
chr4 (1-69)||(52043580-52043649)
chr4 (1-69)||(36771305-36771375)
chr4 (1-58)||(9863773-9863832)
chr4 (149-204)||(25357844-25357898)
chr4 (15-69)||(26557663-26557717)
chr4 (1-69)||(36769388-36769458)
chr4 (1-59)||(4558220-4558280)
[»] chr5 (14 HSPs)
chr5 (1-120)||(35430180-35430300)
chr5 (18-156)||(13294711-13294850)
chr5 (78-161)||(34033686-34033769)
chr5 (78-204)||(2144639-2144764)
chr5 (20-69)||(4754187-4754236)
chr5 (139-204)||(15143605-15143669)
chr5 (1-69)||(26406676-26406745)
chr5 (3-186)||(32520442-32520625)
chr5 (3-82)||(5777788-5777869)
chr5 (7-75)||(13295756-13295825)
chr5 (79-120)||(16093448-16093489)
chr5 (79-120)||(36402485-36402525)
chr5 (148-204)||(17413243-17413298)
chr5 (12-68)||(35314723-35314779)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 10691127 - 10691297
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||     ||||||||| ||||||||||||||||||||||||||| ||    
T  10691127 gtttagaagccaacaacaaactagggtttgtaaagttttatcttgtctacaaacag----gttgagattgaatcaacattgattcaccttgaataaacac 10691222  T
Q  101 tattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctt 175  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10691223 tattaagattgaatctcttgttcaccgaaaaagattcaggattttgagtagaattaggtttcaacacttattctt 10691297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 167 - 308
Target Start/End: Original strand, 10691704 - 10691849
Alignment:
Q  167 cttattcttttaaccctttgatatatctctttgtaaagattggacgttgattgatcggatgacacttgtaaaacacaacacatcatgcatgacgacattg 266  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||      
T  10691704 cttattcttctaaccctttgatatttctctttgtaaagattggacgttgattgttcggaagacacttgtaaaacacaatacatcatgcatgacgacatcc 10691803  T
Q  267 c----taacagagagattggacagagagatgaatttgattaacatc 308  Q
    |    ||||  ||||||| ||| |||||||||||| ||||||||||    
T  10691804 caacataactaagagattagacggagagatgaattcgattaacatc 10691849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11081530 - 11081599
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||||||| |||||||||||||||  || ||||| ||||||||||||| |||||||||    
T  11081530 gtttagaagccaacaacaaaactagggtttgtagagaattctcttggcaacaaacactagggttgagatt 11081599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 13290729 - 13290682
Alignment:
Q  12 aacaacaaactagggtttgtagagttttatcttgtcaacaaacactag 59  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  13290729 aacaacaaactagggtttgtagagttttctcttggcaacaaacactag 13290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 26210630 - 26210737
Alignment:
Q  78 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 177  Q
    |||||||||||||| | |||||||||||||||||| ||||||| |  | |||| |||||| ||| |||  ||||||||| |||| || ||| |||||| |    
T  26210630 attgattcaccttggagaaatactattaggattgagtctcttggtaacggaaagagattcgggactttcggtagaattaggtttgaagactgattcttgt 26210729  T
Q  178 aacccttt 185  Q
    ||||||||    
T  26210730 aacccttt 26210737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45366551 - 45366619
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||| |||||||||||||| |||| ||||||||| | ||| ||||||||||||| |||| ||||    
T  45366551 gtttagaagtcaacaacaaactagagtttatagagttttcttttggcaacaaacactagggttgtgatt 45366619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 6048960 - 6049002
Alignment:
Q  78 attgattcaccttgaataaatactattaggattgaatctcttg 120  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  6048960 attgattcaccttgaagaaacactattaggattgaatctcttg 6049002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 12310215 - 12310173
Alignment:
Q  78 attgattcaccttgaataaatactattaggattgaatctcttg 120  Q
    |||||||||||||||| ||| |||||||||||||| |||||||    
T  12310215 attgattcaccttgaacaaacactattaggattgagtctcttg 12310173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44016934 - 44016864
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| |||||||||||||| |||||  ||| ||||| ||||||||||||| |||| ||||    
T  44016934 gtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggttgggatt 44016864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6067473 - 6067404
Alignment:
Q  1 gtttagaagccaacaa-caaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||| ||||||||||||| |||||  || |||||  |||||||||||| |||| ||||    
T  6067473 gtttagaagccaacaaacaaactagggtttatagagaattctcttggtaacaaacactagggttgggatt 6067404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 6332256 - 6332312
Alignment:
Q  13 acaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||| |||||||||| ||||||||  ||||| |||||||||||||  ||||||||    
T  6332256 acaacagactagggtttatagagtttactcttggcaacaaacactaggattgagatt 6332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 14352970 - 14353153
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||  |||||||| ||||| ||||||||||||||| | ||| |||    
T  14352970 ttagaagccaacaacaaaactagggtttgtagagatttctcttggcaacaaacactaggtttgagattgaatcaccattgattcaccttggagaaacact 14353069  T
Q  102 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttga 187  Q
    ||||||||| | ||||||| || | |||| ||||||  || |||| ||||||||| |||| || || ||||||| |||||||||||    
T  14353070 attaggatttagtctcttggtcacggaaagagattcgagactttgggtagaattaggtttgaa-ac-tattcttgtaaccctttga 14353153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 13785548 - 13785364
Alignment:
Q  3 ttagaagccaacaaca-aactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    ||||||| || ||||| ||||||||||||||||| ||| ||||| |||||||||||||  ||||||   ||||    |||||||||||| || ||| ||     
T  13785548 ttagaagtcagcaacataactagggtttgtagagatttctcttggcaacaaacactaggattgagaacgaatccctcttgattcaccttaaacaaacaca 13785449  T
Q  102 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
    ||||||||||| | ||||| || |  ||| |||||| ||| |||| ||||||||| |||| || ||| |||||| ||||||||||    
T  13785448 attaggattgagtttcttggtcacaaaaagagattcgggactttgggtagaattaggtttgaagactgattcttataaccctttg 13785364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 8213788 - 8213696
Alignment:
Q  18 aaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggatt 110  Q
    |||||| | |||||||||  || ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||  | ||| ||||||||||||    
T  8213788 aaactaagatttgtagagaattctcttgacaacaaacactagtgttgagattgaatcaccattgattcaccttagacaaacactattaggatt 8213696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 49959050 - 49959170
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaata 99  Q
    |||||||||||||||||||| ||| |||||||||||  |  ||||| ||||||||| ||| ||||  ||| |||||  |||||||||||||| | ||| |    
T  49959050 gtttagaagccaacaacaaaactatggtttgtagagaatcctcttggcaacaaacattagggttggaattgaatcactattgattcaccttggagaaaca 49959149  T
Q  100 ctattaggattgaatctcttg 120  Q
    ||||||||| ||| |||||||    
T  49959150 ctattaggaatgagtctcttg 49959170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32261046 - 32261103
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacact 57  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  32261046 gtttagaagccaacaacaaaactaaggtttgtagagttttctcttgacaacaaacact 32261103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 37990682 - 37990798
Alignment:
Q  4 tagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatacta 102  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||| | ||||||||||||| |||| |||| ||||| |||| ||| || ||| | ||| ||||    
T  37990682 tagaagccaacaacaaaactaggatttgtagagatttctctcggcaacaaacactagggttg-gattgaatcaccattaatttactttggagaaacacta 37990780  T
Q  103 ttaggattgaatctcttg 120  Q
    |||| ||||| |||||||    
T  37990781 ttagaattgagtctcttg 37990798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26332828 - 26332770
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactag 59  Q
    |||||||||||||||  ||| |||||||||||||||||  ||||| |||||||||||||    
T  26332828 gtttagaagccaacacaaaaatagggtttgtagagtttgctcttggcaacaaacactag 26332770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 30738831 - 30738723
Alignment:
Q  78 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 177  Q
    |||||||||||||| | ||| |||||||||||||| ||||||| ||   | || |||||  |||||||| ||||||||| |||| || |||||||||| |    
T  30738831 attgattcaccttgga-aaacactattaggattgagtctcttggtcataggaagagattg-ggattttgggtagaattaggtttgaagacttattcttgt 30738734  T
Q  178 aaccctttgat 188  Q
    |||||||||||    
T  30738733 aaccctttgat 30738723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28279278 - 28279347
Alignment:
Q  1 gtttagaagccaacaacaaact-agggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||| |||||| | ||||||||||||||||  ||||| ||||||||||||| |||| ||||    
T  28279278 gtttagaagccaataacaaaattagggtttgtagagtttgctcttgacaacaaacactagggttgggatt 28279347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27916508 - 27916572
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttg 64  Q
    |||||||||||| ||| ||| ||||||||||||||||||  ||||| ||||||||||||| ||||    
T  27916508 gtttagaagccagcaagaaaactagggtttgtagagtttgctcttggcaacaaacactagggttg 27916572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46783053 - 46783121
Alignment:
Q  1 gtttagaagccaacaa-caaactagggtttgtagagttttatcttgtcaacaaacactagagttgagat 68  Q
    |||||||||||||||| ||||||| ||||| |||||  |||||||  ||||||||||||| ||||||||    
T  46783053 gtttagaagccaacaaacaaactatggtttatagagaattatctttgcaacaaacactagggttgagat 46783121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3091379 - 3091309
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| |||||||||||||| |||||  ||| |||||  |||||||||||| |||||||||    
T  3091379 gtttagaagccaacatacaaactagggtttatagagaatttctcttggtaacaaacactagggttgagatt 3091309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 13125596 - 13125536
Alignment:
Q  143 tttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    |||| ||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  13125596 tttgggtagaattaggtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 13125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 13985356 - 13985172
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaata 99  Q
    |||||||||||||||||||| |||| |||||||||||||| | |||  || ||||| || ||||| |||||||||| ||||||||||||||||| ||| |    
T  13985356 gtttagaagccaacaacaaaactagagtttgtagagtttttt-ttggaaataaacattatagttgggattaaatcaccattgattcaccttgaaaaaaca 13985258  T
Q  100 ctattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
    ||||||||||||| ||||||| || | | || |||||| ||| |||| ||||||||| |||| || ||| |||||| ||||||||||    
T  13985257 ctattaggattgagtctcttggtcacaggaagagattcgggactttgggtagaattaggtttgaa-actgattcttgtaaccctttg 13985172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 33839181 - 33839015
Alignment:
Q  18 aaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattgaatctc 117  Q
    |||||||| |||||| |||||| ||||| ||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| |||||||||||||| ||||    
T  33839181 aaactaggatttgtaaagttttctcttggcaacaaacactagggttgaaattgaatcaccattgattcaccttgaagaaacactattaggattgagtctc 33839082  T
Q  118 ttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
    ||| |  | | || ||||||| || |||| ||||||||| |||| || ||| |||||| ||||||||||    
T  33839081 ttggt--caggaagagattcaagactttgggtagaattaggtttgaagactaattcttgtaaccctttg 33839015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 13986090 - 13985978
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaata 99  Q
    ||||||||| |||||||||| ||||  ||||||||||||| |||||  |||||||| |||  ||| |||| ||||| ||||||||||||||| | ||| |    
T  13986090 gtttagaagtcaacaacaaaactagaatttgtagagttttctcttggaaacaaacattaggattgggattgaatcaccattgattcaccttggagaaaca 13985991  T
Q  100 ctattaggattga 112  Q
    |||||||||||||    
T  13985990 ctattaggattga 13985978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 33021055 - 33020992
Alignment:
Q  127 gaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatat 190  Q
    |||| |||||| |||||||| ||||||||| |||| || ||| |||||| ||||||||||||||    
T  33021055 gaaatagattcgggattttgtgtagaattaggtttgaagactgattcttgtaaccctttgatat 33020992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2267296 - 2267226
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| |||||||||||||| |||||  ||| ||||| ||||||||||||  |||||||||    
T  2267296 gtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactacggttgagatt 2267226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 11701199 - 11701114
Alignment:
Q  34 agttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattgaatctcttg 120  Q
    |||||| ||||| ||| |||||| || |||| |||| ||||| ||||||||||||||||| ||| | |||||| ||||| |||||||    
T  11701199 agttttctcttggcaataaacaccagggttg-gattgaatcaccattgattcaccttgaagaaacattattagaattgagtctcttg 11701114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 25684626 - 25684668
Alignment:
Q  79 ttgattcaccttgaataaat-actattaggattgaatctcttg 120  Q
    ||||||||||||||| |||| ||||||||||||||||||||||    
T  25684626 ttgattcaccttgaacaaatcactattaggattgaatctcttg 25684668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30423121 - 30423191
Alignment:
Q  1 gtttagaagccaacaa-caaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||| ||||||||||||| |||||  ||| ||||| ||||||||||||| | |||||||    
T  30423121 gtttagaagccaacaaacaaactagggtttatagagaatttctcttggcaacaaacactagggctgagatt 30423191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31573992 - 31573934
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacacta 58  Q
    |||||||||||||||  ||| ||||| ||||||||||||| ||||| ||||||||||||    
T  31573992 gtttagaagccaacacgaaaactaggatttgtagagttttctcttggcaacaaacacta 31573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 17847661 - 17847783
Alignment:
Q  79 ttgattcaccttgaat-aaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 177  Q
    |||||||||||||||  ||| |||||||||||||||||||||| || | | || ||||| | || |||| ||||||||| |||| || ||| |||||| |    
T  17847661 ttgattcaccttgaacgaaacactattaggattgaatctcttgatcacgggaagagattga-gactttgggtagaattaggtttgaagactaattcttgt 17847759  T
Q  178 aaccctttgatatatctctttgtaaa 203  Q
    || |||||||||| ||| ||||||||    
T  17847760 aa-cctttgatatctct-tttgtaaa 17847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 31035322 - 31035376
Alignment:
Q  148 gtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    ||||||||| |||| || |||||||||| ||||||||||  ||||||||||||||||    
T  31035322 gtagaattaggtttgaagacttattcttgtaaccctttg--atatctctttgtaaag 31035376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 17904629 - 17904442
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatca-acattgattcaccttgaataaat 98  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||  |||| |||| ||||| |  ||| ||||||||||| | |     
T  17904629 gtttagaagccaacaacaaaactagggtttgtagagttttctctttgcaacaaacactaaggttgggattgaatcacaatttggttcaccttgaacacac 17904530  T
Q  99 actattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
    |||||||||| ||||||||||| ||   | || ||||| |||||||||  |||||||| |||| |||||| |||||| ||||||||||    
T  17904529 actattaggactgaatctcttggtcatgggaagagatttaggattttggctagaattaggtttaaacactgattcttgtaaccctttg 17904442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 7542656 - 7542459
Alignment:
Q  4 tagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactat 103  Q
    ||||||||||||| ||| ||||||||||| ||  || ||||| ||||||||||||| |||| |||| |||||  ||||||||| |||| | ||| |||||    
T  7542656 tagaagccaacaataaaatagggtttgtaaagaattctcttggcaacaaacactagggttgggattgaatcacaattgattca-cttggagaaacactat 7542558  T
Q  104 taggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaa 203  Q
    || |||||| ||||||| || | | || |||||  ||| ||||  |||||||| |||| || ||| ||| || ||||||||||  |||||||||||||||    
T  7542557 tatgattgagtctcttggtcacgggaagagatttgggaatttggatagaattaggtttgaagactaatttttgtaaccctttg--atatctctttgtaaa 7542460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3833315 - 3833432
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||| ||| |||| ||||||| ||  || ||||| ||||||||| ||| |||| |||| ||||| ||||||||||||||||||||| |||    
T  3833315 ttagaagccaacaagaaaactagagtttgtaaagaattctcttg-caacaaacattagggttgggattgaatcaccattgattcaccttgaataaagact 3833413  T
Q  102 attaggattgaatctcttg 120  Q
    | || ||| || |||||||    
T  3833414 actatgatcgagtctcttg 3833432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24542945 - 24542877
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| ||||||| ||||| ||||| ||| ||||| ||||||||||||| |||| ||||    
T  24542945 gtttagaagccaacaccaaactatggtttatagagatttctcttggcaacaaacactagggttgggatt 24542877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22858220 - 22858151
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||| |||| | ||||||||||||||||| |||| |||||  |||||||||||| |||||||||    
T  22858220 gtttagaagctaacacaaaaactagggtttgtagaattttctcttggtaacaaacactagggttgagatt 22858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 20526855 - 20526923
Alignment:
Q  2 tttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||| |||||| | ||||||||| |||||||||||  ||||| ||||||||||||| |||||||||    
T  20526855 tttagaaaccaacacaaaaactaggggttgtagagtttgctcttgacaacaaacactagggttgagatt 20526923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4595057 - 4595098
Alignment:
Q  18 aaactagggtttgtagagttttatcttgtcaacaaacactag 59  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  4595057 aaactagggtttgtagagttttcacttggcaacaaacactag 4595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 17933452 - 17933419
Alignment:
Q  267 ctaacagagagattggacagagagatgaatttga 300  Q
    |||||||||||||||||||||| |||||||||||    
T  17933452 ctaacagagagattggacagagggatgaatttga 17933419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 25078690 - 25078634
Alignment:
Q  147 agtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    |||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  25078690 agtagaattaggtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 25078634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 28037905 - 28037806
Alignment:
Q  103 ttaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaa 202  Q
    |||||||||| || ||||||| | |||| ||||| || | |||| ||||||||| |||| ||  ||||||||| |||||||||||||| ||| |||||||    
T  28037905 ttaggattgagtcccttgttcacggaaatagattgag-actttgggtagaattaggtttaaaatcttattcttgtaaccctttgatatctct-tttgtaa 28037808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17012088 - 17012155
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttg--tagagttttatcttgtcaacaaacactagagttgag 66  Q
    |||||||||  |||||||||||||||||||  || |||||  ||||| ||||||||||||| ||||||    
T  17012088 gtttagaagtaaacaacaaactagggtttgtataaagtttgctcttggcaacaaacactagggttgag 17012155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 25078810 - 25078758
Alignment:
Q  13 acaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttga 65  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||| ||| |||||    
T  25078810 acaacaatctagggtttgtagagtttactcttggcaacaaacattagggttga 25078758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 43483128 - 43482946
Alignment:
Q  6 gaagccaacaacaaact-agggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactatt 104  Q
    ||||||||||| ||| | |||||||||||||||||||||| |||||||||| ||| |||| |||| ||| | ||||| ||||||||||| ||| |  |||    
T  43483128 gaagccaacaataaaattagggtttgtagagttttatcttatcaacaaacattagggttgggattgaattatcattgtttcaccttgaacaaacaacatt 43483029  T
Q  105 aggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttga 187  Q
    ||||||||| |||||| || |||||| ||||||| || ||||  |||| |||||||| || | | |||||| |||||||||||    
T  43483028 aggattgaaactcttggtcaccgaaagagattcatgactttggatagatttaagtttgaagagtgattcttgtaaccctttga 43482946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 26345585 - 26345757
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||||||| ||||| ||||||||| ||| |||||  |||||||| ||| ||||||||| || || | |||||||||||| |  ||| |||    
T  26345585 ttagaagccaacaacaaaactaggatttgtagagatttctcttggtaacaaacattagggttgagattgaaacaccgttgattcacctt-agcaaacact 26345683  T
Q  102 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctt 175  Q
    ||||||||||| ||||||| || | |||| ||||||  || |||| |||||||||||||| || ||| ||||||    
T  26345684 attaggattgagtctcttggtcacggaaagagattcgagactttgggtagaattaagtttgaagactgattctt 26345757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 34575388 - 34575207
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagtttta-tcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaat 98  Q
    |||||||||||||||  ||| || ||| ||||||||||||  ||||| ||||||||| ||| ||||||||| ||| | ||||||||||||||| | |||     
T  34575388 gtttagaagccaacactaaaacttgggattgtagagtttttctcttggcaacaaacattagggttgagattgaataatcattgattcaccttggagaaac 34575289  T
Q  99 actattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaacc 181  Q
    ||||||||||| || ||||||| ||  ||  |||||||| ||| |||| ||||||||| |||| || ||| |||||| |||||    
T  34575288 actattaggatggagtctcttggtc-tcgggaaagattcgggactttgggtagaattaggtttgaagactaattcttataacc 34575207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 41303311 - 41303125
Alignment:
Q  1 gtttagaagccaacaacaaac-tagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaata 99  Q
    ||||||||||||||||||||  ||| ||||||||||||||  |||| |||||||||||| ||||| |||| ||||  ||||| || |||||| | ||| |    
T  41303311 gtttagaagccaacaacaaagatagagtttgtagagtttttacttggcaacaaacactaaagttgggattgaatcgccattgttttaccttggagaaaaa 41303212  T
Q  100 ctattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
     |||||||||| | ||||||| || | | || |||||| ||| |||| ||||||||| |||| || ||| |||| | ||||| ||||    
T  41303211 ttattaggattaagtctcttggtcacaggaagagattcgggactttgggtagaattatgtttgaagactgattcatgtaaccttttg 41303125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 10942788 - 10942671
Alignment:
Q  3 ttagaagccaacaacaa-actagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||| || ||||||| ||||||||  || ||||| ||||||||||||| |||| || | ||| | ||||| ||||||||||| ||| |||    
T  10942788 ttagaagccaacaataatactagggattgtagagaattctcttggcaacaaacactagggttgtgaatgaattatcattgtttcaccttgaagaaacact 10942689  T
Q  102 attaggattgaatctctt 119  Q
    ||||||||||| ||||||    
T  10942688 attaggattgagtctctt 10942671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 10948657 - 10948540
Alignment:
Q  3 ttagaagccaacaacaa-actagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||| || ||||||| ||||||||  || ||||| ||||||||||||| |||| || | ||| | ||||| ||||||||||| ||| |||    
T  10948657 ttagaagccaacaataatactagggattgtagagaattctcttggcaacaaacactagggttgtgaatgaattatcattgtttcaccttgaagaaacact 10948558  T
Q  102 attaggattgaatctctt 119  Q
    ||||||||||| ||||||    
T  10948557 attaggattgagtctctt 10948540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 17921742 - 17921863
Alignment:
Q  67 attaaatcaacattgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaaca 166  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||| |  | | || |||||| ||| |||| ||||||||| |||| || |    
T  17921742 attaaatcatcattgattcaccttgaagaaacactattaggattgagtctcttggttacaggaagagattcgggactttgggtagaattaggttttaaaa 17921841  T
Q  167 cttattcttttaaccctttgat 188  Q
    || ||||||  |||||||||||    
T  17921842 ctgattcttgcaaccctttgat 17921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 30720872 - 30720771
Alignment:
Q  18 aaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattgaatctc 117  Q
    ||||||||||||||||||  || ||||| || |||||||||| ||||||||| |||||  ||||||||| |||| | ||| |||||||||||||| ||||    
T  30720872 aaactagggtttgtagagaattctcttggcaccaaacactagggttgagattgaatcactattgattcatcttggagaaacactattaggattgagtctc 30720773  T
Q  118 tt 119  Q
    ||    
T  30720772 tt 30720771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30262044 - 30261976
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||| ||| ||||||||| |||||||||    
T  30262044 gtttagaagccaacaacaaactacggtttatagagttttctcttggcaataaacactagggttgagatt 30261976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 7502918 - 7503008
Alignment:
Q  22 tagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattga 112  Q
    ||||||||||||||  || ||||| ||||||||||||| |||| |||| ||||| ||||||| ||||||| | ||| ||||||||||||||    
T  7502918 tagggtttgtagagaattctcttgacaacaaacactagggttgggattgaatcaccattgatccaccttggagaaacactattaggattga 7503008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 27248179 - 27248018
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||||||| ||| ||||||||||   || ||||| ||||||||||||  | ||||||| ||||| ||||||||||| ||| | ||| | |    
T  27248179 ttagaagccaacaacaaagctaaggtttgtagataattctcttggcaacaaacactacgggtgagattgaatcaccattgattcactttggagaaacatt 27248080  T
Q  102 at--taggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 161  Q
    ||  ||||||||| ||||||| || | | || |||| ||||| |||| ||||||||| ||||    
T  27248079 attataggattgagtctcttggtcacgggaagagatccaggactttgggtagaattaggttt 27248018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43139364 - 43139433
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| | ||||| |||||||||||||||  ||||| ||||||||||||| |||||||||    
T  43139364 gtttagaagccaacacaaaaacttgggtttgtagagtttgctcttggcaacaaacactagggttgagatt 43139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 15693921 - 15694083
Alignment:
Q  41 tcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcagg 140  Q
    ||||| ||||||||||| | | || |||||||||| | |||||||||| || | ||| |||||||||||  | ||||||| || | | || |||||  ||    
T  15693921 tcttggcaacaaacacttgggctgggattaaatcaccgttgattcaccgtggagaaacactattaggataaagtctcttggtcacaggaagagatttggg 15694020  T
Q  141 attttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    | |||| ||||||||| |||| || ||| |||||| ||||| |||||||| ||| |||||||||    
T  15694021 actttgggtagaattaggtttgaagactaattcttgtaaccttttgatatctct-tttgtaaag 15694083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41304659 - 41304590
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||||||| |||||||||||| |||||| | ||| ||||||||| ||| ||| |||||    
T  41304659 gtttagaagccaacaacaaaactagggtttgtaaagttttctattggcaacaaacattagggttaagatt 41304590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 27136304 - 27136201
Alignment:
Q  99 actattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctcttt 198  Q
    |||||||||||||||||||||| || | |||| | |||  ||| |||||||||||||| ||||  | |||||||||| |||| | ||||||| ||| |||    
T  27136304 actattaggattgaatctcttggtcacggaaagaaatt-gggactttgagtagaattaggtttggagacttattcttgtaactcattgatatctct-ttt 27136207  T
Q  199 gtaaag 204  Q
    ||||||    
T  27136206 gtaaag 27136201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33603905 - 33603973
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||| | |||||||||||||||||| ||||| ||| | ||| ||||||||| ||| |||| ||||    
T  33603905 gtttagaaacaaacaacaaactagggtttatagagatttcttttggcaacaaacattagggttgggatt 33603973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11066573 - 11066734
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaata 99  Q
    ||||||||| |||||||||| ||   |||||||||||||| ||||| ||| ||||||||| ||||||||| || || ||||||||||||||| | ||| |    
T  11066573 gtttagaagtcaacaacaaaactgaagtttgtagagttttctcttggcaataaacactagggttgagattgaaccaccattgattcaccttggagaaaca 11066672  T
Q  100 ctattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 161  Q
    ||||||||||||||||| ||| || | | || |||||| ||| |||| ||||||||| ||||    
T  11066673 ctattaggattgaatcttttgatcacgggaagagattcgggactttgggtagaattaggttt 11066734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 23941738 - 23941930
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatct--tgtcaacaaacactagagttgagattaaatcaaca---ttgattcaccttgaat 94  Q
    |||||||||||||||||||| ||||||||||||||||||| |||  || ||| ||||||||  |||| |||| ||||| ||   |||||| |||||||||    
T  23941738 gtttagaagccaacaacaaaactagggtttgtagagttttttctcttgacaataaacactaaggttgggattgaatcatcaccgttgatttaccttgaat 23941837  T
Q  95 aaatactattaggattgaatctc-ttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
    ||||||||||||| || | |||| ||| || | | ||||||||| ||| |||| ||||||||| |||| || |||||||||| ||||| ||||    
T  23941838 aaatactattaggcttaagtctctttggtcacgggaaaagattcgggaatttgggtagaattaggtttgaatacttattcttgtaaccgtttg 23941930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11072929 - 11073018
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacctt 90  Q
    ||||||||| |||||||||| |||| ||||| |||||||| ||||| |||||||| |||| |||| |||| ||||| ||||||||||||||    
T  11072929 gtttagaagtcaacaacaaaactagagtttggagagttttctcttggcaacaaac-ctagggttgggattgaatcaccattgattcacctt 11073018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15823881 - 15823813
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||   |||||||||||| | |||||||    
T  15823881 gtttggaagccaacaacaaactagggtttatagagttttctctttgaaacaaacactagggctgagatt 15823813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13419873 - 13419942
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||| |||||||||| ||| ||||||||||||||||||  ||||| ||||||||||||| |||| ||||    
T  13419873 gtttaaaagccaacaagaaaactagggtttgtagagtttgctcttggcaacaaacactagggttgggatt 13419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 42297814 - 42297751
Alignment:
Q  127 gaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatat 190  Q
    |||| |||||| |||||||| ||||||||| |||| || ||| |||||| ||||||||||||||    
T  42297814 gaaatagattcgggattttgtgtagaattaggtttgaagactgattcttgtaaccctttgatat 42297751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 562041 - 561981
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgta--gagttttatcttgtcaacaaacactag 59  Q
    ||||||||| |||||  |||||||||||||||  ||||||| ||||| |||||||||||||    
T  562041 gtttagaagtcaacatgaaactagggtttgtatagagttttctcttggcaacaaacactag 561981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46966920 - 46966851
Alignment:
Q  1 gtttagaagccaacaacaaact-agggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||||||| | | ||||| ||||| ||  ||||| ||||||||||||| |||||||||    
T  46966920 gtttagaagccaacaacaaaattaaggtttatagagattcctcttggcaacaaacactagggttgagatt 46966851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 46966813 - 46966724
Alignment:
Q  114 tctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaaga 205  Q
    ||||||| || | ||||||||||| ||| |||| ||||||||| |||| || ||| ||| || ||||| ||||  |||||||||||||||||    
T  46966813 tctcttgctcacggaaaaagattcgggactttgggtagaattaggtttgaagactaattattgtaaccatttg--atatctctttgtaaaga 46966724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 57710 - 57518
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaa-cactagagttgagattaaatcaacattga-ttcaccttgaataaa 97  Q
    |||||||||||||||||||| |||| |||||||||||||  ||||| ||||||| |||||  ||||||||| |||||  || || ||||||||||| |||    
T  57710 gtttagaagccaacaacaaaactagagtttgtagagtttactcttggcaacaaaacactatggttgagattgaatcactatagaattcaccttgaaaaaa 57611  T
Q  98 tactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatat 190  Q
     |||||||||||||||||||||| ||   | || |||||| ||| |||| || |||||| |||| || |  ||||||| ||||||||||||||    
T  57610 cactattaggattgaatctcttggtcattggaagagattcgggactttgggtggaattaggtttgaagatctattcttgtaaccctttgatat 57518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 54906641 - 54906845
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaac----attgattcaccttgaataaa 97  Q
    |||||||||||||| ||| |||||||||||| |||||| ||||  ||||||||||||| |||| |||| ||||| |    ||||||||||| || | |||    
T  54906641 ttagaagccaacaataaaactagggtttgtaaagttttctctttgcaacaaacactagggttgggattgaatcatcattgattgattcaccatggagaaa 54906740  T
Q  98 tactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctt 197  Q
     |||||||| ||||| ||||||| || | | || ||||||| || |||  ||||||||| |||| || ||| |||||| |||| |||||  |||||||||    
T  54906741 cactattagaattgagtctcttggtcactggaagagattcaagactttaggtagaattaggtttgaagactgattcttgtaactctttg--atatctctt 54906838  T
Q  198 tgtaaag 204  Q
    |||||||    
T  54906839 tgtaaag 54906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32274173 - 32274105
Alignment:
Q  1 gtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||||||||||| |||| ||||| ||| | ||| |||||||||||||||||||||||    
T  32274173 gtttagaagccaacaacaaactagagtttatagagatttctattggcaacaaacactagagttgagatt 32274105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 5516521 - 5516362
Alignment:
Q  3 ttagaagccaacaacaaac-tagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||| |||||||||||  |||||||||||||| ||| | ||| ||||||||||||| |||| |||| ||||| |||||||||| |||| | ||| ||     
T  5516521 ttagaatccaacaacaaaaatagggtttgtagagatttcttttggcaacaaacactagggttgggattgaatcatcattgattcatcttggagaaacacc 5516422  T
Q  102 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 161  Q
    |||||| |||  ||||||| || | | || ||||||  || |||| ||||||||||||||    
T  5516421 attaggtttgggtctcttgctcacgggaagagattcgagactttgcgtagaattaagttt 5516362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10112935 - 10113004
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| | |||||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  10112935 gtttagaagccaacacaaaaactagggtttgtagagtttgctcttggcaacaaacactagggttgagatt 10113004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 47566402 - 47566472
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||| ||||||||||||| |||||||||    
T  47566402 gtttagaagccaacatacaaactagggtttatagagaatttatcttggcaacaaacactagggttgagatt 47566472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 3982438 - 3982253
Alignment:
Q  12 aacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattg 111  Q
    |||||||||||||||||  ||| | ||| ||||| ||||||||||||| |||||||||   |      | |||||||||| | ||| |||||||||||||    
T  3982438 aacaacaaactagggttcatagtgatttctcttggcaacaaacactagggttgagattgttt------ttattcaccttggagaaacactattaggattg 3982345  T
Q  112 aatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    | | ||||| || | | || |||||  ||| |||| |||||||||||||| || ||| |||||| |||| ||||||||| ||| |||||||||    
T  3982344 agtttcttggtcacgggaagagatttgggactttgggtagaattaagtttgaagactgattcttgtaacactttgatatctct-tttgtaaag 3982253  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52043649 - 52043580
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| |||| ||| ||||||||||||||| |||||||| |||||||||| |||| ||||    
T  52043649 gtttagaagccaacatcaaaactaaggtttgtagagttttctcttgtcagcaaacactagggttgggatt 52043580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36771305 - 36771375
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| ||||||||||||||| ||||  ||| ||||| ||||||||||||| |||||||||    
T  36771305 gtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgagatt 36771375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9863773 - 9863832
Alignment:
Q  1 gtttagaagccaacaacaaa--ctagggtttgtagagttttatcttgtcaacaaacacta 58  Q
    ||||||||||||| ||||||  ||||||||||||||||||  ||||| ||||||||||||    
T  9863773 gtttagaagccaaaaacaaaaactagggtttgtagagtttgttcttggcaacaaacacta 9863832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 25357844 - 25357898
Alignment:
Q  149 tagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    ||||||||||||| || |||||||||| |||||||||||||| ||| |||||||||    
T  25357844 tagaattaagtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 25357898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 26557663 - 26557717
Alignment:
Q  15 aacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| ||||| ||| ||||| ||||||||||||| |||| ||||    
T  26557663 aacaaactagggtttatagagatttctcttggcaacaaacactagggttgggatt 26557717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36769388 - 36769458
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 69  Q
    ||||||||||||||| ||||||||||||||| ||||  ||| ||||| ||||||||||||| |||| ||||    
T  36769388 gtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgggatt 36769458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4558220 - 4558280
Alignment:
Q  1 gtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactag 59  Q
    ||||||||||||||| |||||||||||||| |||||  ||| ||||| |||||||||||||    
T  4558220 gtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactag 4558280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 35430180 - 35430300
Alignment:
Q  1 gtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaata 99  Q
    ||||||||| ||||| |||| |||||||||||| |||||| ||||| ||| ||||||||| |||  |||| ||||| ||||||||||||||| | ||| |    
T  35430180 gtttagaagtcaacatcaaaactagggtttgtacagttttctcttggcaataaacactagggtttggattgaatcaccattgattcaccttggagaaaca 35430279  T
Q  100 ctattaggattgaatctcttg 120  Q
    ||||||  ||||| |||||||    
T  35430280 ctattacaattgagtctcttg 35430300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 13294711 - 13294850
Alignment:
Q  18 aaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaat-actattaggattgaatct 116  Q
    ||||||| ||||||||||  || ||||| |||||| |||||| |||| |||| ||||| |||||||| |||||||| |||  |||||||||||||| |||    
T  13294711 aaactagagtttgtagagaattctcttggcaacaagcactagggttgggattgaatcaccattgatttaccttgaacaaaacactattaggattgattct 13294810  T
Q  117 cttgttcgccgaaaaagattcaggattttgagtagaatta 156  Q
    |||| || |  ||| |||||||||| ||||  ||||||||    
T  13294811 cttgatcacaaaaagagattcaggactttggatagaatta 13294850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 34033769 - 34033686
Alignment:
Q  78 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 161  Q
    ||||||| |||||| | ||| |||||||||||||| ||||||| |||| | || ||||||||||||||| ||||||||||||||    
T  34033769 attgatttaccttggagaaacactattaggattgagtctcttggtcgcgggaagagattcaggattttgggtagaattaagttt 34033686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 2144764 - 2144639
Alignment:
Q  78 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 177  Q
    |||||||||||||| | ||| ||||||||||| || ||||||| |||| | || |||||||||| |||| || |||||| |||| || ||| |||||| |    
T  2144764 attgattcaccttggagaaacactattaggatggagtctcttggtcgcgggaagagattcaggactttgggtggaattaggtttgaagactaattcttgt 2144665  T
Q  178 aaccctttgatatatctctttgtaaag 204  Q
    || |||||  |||||||||||||||||    
T  2144664 aa-ccttttttatatctctttgtaaag 2144639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4754187 - 4754236
Alignment:
Q  20 actagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  4754187 actagggtttgtagagtttgctcttggcaacaaacactagggttgagatt 4754236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 15143605 - 15143669
Alignment:
Q  139 ggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    |||||||| ||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  15143605 ggattttgggtagaattaggtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 15143669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26406745 - 26406676
Alignment:
Q  1 gtttagaagccaacaa-caaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 69  Q
    |||||||| ||||||| ||||||||||||| |||||  || ||||| ||||||||||||| |||||||||    
T  26406745 gtttagaaaccaacaaacaaactagggtttatagagaattctcttggcaacaaacactagggttgagatt 26406676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 32520442 - 32520625
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 101  Q
    |||||||||||||||||| ||||| ||||||||| | | |  || ||||||||||||  ||||  ||| ||||| ||||||||||| ||  | ||| |||    
T  32520442 ttagaagccaacaacaaaactagg-tttgtagagatctctggtggcaacaaacactatggttggaattgaatcatcattgattcacattcgagaaacact 32520540  T
Q  102 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 186  Q
    |||| |||||| ||||| | |  | | || ||||||| || |||| ||||||||| |||| || ||| |||||| ||||||||||    
T  32520541 attaagattgagtctctcgattacgggaagagattcatgactttgggtagaattaggtttgaaaactgattcttgtaaccctttg 32520625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 5777869 - 5777788
Alignment:
Q  3 ttagaagccaacaacaaa-ctagggtttgtagag-ttttatcttgtcaacaaacactagagttgagattaaatcaacattga 82  Q
    |||||||||||||||||| |||| |||||||||| |||| ||||| ||||||| | ||| |||| |||| ||||| ||||||    
T  5777869 ttagaagccaacaacaaaactagagtttgtagagtttttctcttgacaacaaatagtagggttgggattgaatcaccattga 5777788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 13295756 - 13295825
Alignment:
Q  7 aagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatca 75  Q
    |||||||||||||| |||||||||||| ||  || | ||| |||||||||||||||||| |||| |||||    
T  13295756 aagccaacaacaaaactagggtttgtatagaattcttttggcaacaaacactagagttgggattcaatca 13295825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 16093489 - 16093448
Alignment:
Q  79 ttgattcaccttgaataaatactattaggattgaatctcttg 120  Q
    ||||||||||||||| ||| |||||||||||||| |||||||    
T  16093489 ttgattcaccttgaaaaaacactattaggattgagtctcttg 16093448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 36402525 - 36402485
Alignment:
Q  79 ttgattcaccttgaataaatactattaggattgaatctcttg 120  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  36402525 ttgattcaccttgga-aaatactattaggattgaatctcttg 36402485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 17413298 - 17413243
Alignment:
Q  148 gtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 204  Q
    ||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  17413298 gtagaattaggtttgaaaacttattcttgtaaccctttgatatctct-tttgtaaag 17413243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 35314723 - 35314779
Alignment:
Q  12 aacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagat 68  Q
    ||||||||||||| |||| ||| | ||| ||||| ||||||||||||| ||||||||    
T  35314723 aacaacaaactagagtttataggggtttctcttggcaacaaacactagggttgagat 35314779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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