View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_43 (Length: 304)
Name: NF2504_low_43
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 13830255 - 13830330
Alignment:
| Q |
219 |
atgatgcaaaatatgcacatttacctgatgaagtttaaggtcgattttcttcaatataagtggtattcctcctttg |
294 |
Q |
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| T |
13830255 |
atgatgcaaaatatgcacatttacctgatgaagtttaaggtcaattttcttcaatataagtggtattcctcctttg |
13830330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 13830017 - 13830060
Alignment:
| Q |
18 |
atatttgtgtttgatgtaatattacaggtatctaataatttgga |
61 |
Q |
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| T |
13830017 |
atatttgtgtttgatgtaatattacatgtatctaataatttgga |
13830060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 13830150 - 13830230
Alignment:
| Q |
112 |
caaagcaaaatacaaattaagtgaaatttcacttc-nnnnnnnccccaataa-tatatgtgacattcaatcttctgtttag |
190 |
Q |
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| T |
13830150 |
caaagcaaaatacaaattaagtgaaatttcacttcttttttttccccaataattatatgtgacatccaatcttctgtttag |
13830230 |
T |
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