View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_45 (Length: 294)
Name: NF2504_low_45
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_45 |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1355664 - 1355371
Alignment:
| Q |
1 |
aaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattactagtctacttagttgt |
100 |
Q |
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| T |
1355664 |
aaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattactagtctacttagttgt |
1355565 |
T |
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| Q |
101 |
tggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttt |
200 |
Q |
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| T |
1355564 |
tggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttt |
1355465 |
T |
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| Q |
201 |
tgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
294 |
Q |
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| T |
1355464 |
agcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
1355371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 86 - 294
Target Start/End: Complemental strand, 1362465 - 1362257
Alignment:
| Q |
86 |
agtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaac |
185 |
Q |
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| T |
1362465 |
agtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaac |
1362366 |
T |
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| Q |
186 |
cttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
285 |
Q |
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| T |
1362365 |
tttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
1362266 |
T |
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| Q |
286 |
tcttcctca |
294 |
Q |
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||||||||| |
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| T |
1362265 |
tcttcctca |
1362257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 294
Target Start/End: Complemental strand, 20493182 - 20493042
Alignment:
| Q |
154 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
253 |
Q |
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|||| |||||||| ||||||||||| ||||| ||| |||| ||||| ||||| || || | ||||||||||||||||||| |||||||||||||||| |
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| T |
20493182 |
tattcattgtgaagatcttttgaaccgaaaatctttcccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatg |
20493083 |
T |
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| Q |
254 |
agtgagccacagagtccctagtaaaagacccatcttcctca |
294 |
Q |
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| || | ||||||||||||||| |||||||||| |||| |
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| T |
20493082 |
ttttggctatagagtccctagtaaaggacccatcttgctca |
20493042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 105 - 294
Target Start/End: Complemental strand, 11532409 - 11532220
Alignment:
| Q |
105 |
attggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgca |
204 |
Q |
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||||||| |||| |||||||| | ||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| |
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| T |
11532409 |
attggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggca |
11532310 |
T |
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| Q |
205 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
294 |
Q |
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| T |
11532309 |
ttgtttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctca |
11532220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 12847066 - 12846885
Alignment:
| Q |
113 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
212 |
Q |
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||||||||||||| | |||||||||||| || || ||||| |||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
12847066 |
gaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcct |
12846967 |
T |
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| Q |
213 |
gaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
294 |
Q |
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| || || ||||||| |||||| ||||| |||||||||| | || ||| ||||||||||||| |||||||| |||||| |
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| T |
12846966 |
gtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctca |
12846885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 14589470 - 14589371
Alignment:
| Q |
154 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
253 |
Q |
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|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 14623128 - 14623029
Alignment:
| Q |
154 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
253 |
Q |
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| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 29955088 - 29954907
Alignment:
| Q |
113 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
212 |
Q |
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|||| |||||||| | |||||||||||| | || | ||| |||| |||||||| ||||||||||||||||||||| ||| ||||| ||||| |||| |
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| T |
29955088 |
gaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc- |
29954990 |
T |
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| Q |
213 |
gaaac-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
294 |
Q |
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| T |
29954989 |
gatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctca |
29954907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 294
Target Start/End: Original strand, 51369360 - 51369546
Alignment:
| Q |
108 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattg |
207 |
Q |
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|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||| ||||| |
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| T |
51369360 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcattt |
51369459 |
T |
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| Q |
208 |
ttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
294 |
Q |
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|||||| | | || |||||||||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| |||| |
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| T |
51369460 |
ttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctca |
51369546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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