View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_46 (Length: 291)
Name: NF2504_low_46
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 28 - 282
Target Start/End: Complemental strand, 46661424 - 46661166
Alignment:
| Q |
28 |
aattgaaaagaaattaaagccatgtgtattaatagttctttggattaaaaagaagattgaaatgtttgcacttctgacatgggtttaaggtgcagttgtt |
127 |
Q |
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| T |
46661424 |
aattgaaaagaaattaaaggcatgtgtattaatagttttttggattaaagagaagattgaaatgtttgcacttctgacatgggtttaaggtgcagttttt |
46661325 |
T |
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| Q |
128 |
gcaggtggctagatttaacccaagaagtaacattattgcaatgtt----ttttgccacttttgtttggtg-aaaaattatatgaattttgaaaacttagt |
222 |
Q |
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| T |
46661324 |
gcagatggctagatttaaccaaaaaagtgacattattgcaatgttttttttttgtcacttttgtttggtgaaaaaataatatgaattttgaaagcttagt |
46661225 |
T |
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| Q |
223 |
ggggtgtattcgaatgggattataaagcattttaaaagagttttttaagcatgtatttga |
282 |
Q |
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| T |
46661224 |
gcggtgtattggaatgggattttaatgcattttaaaagag-tttttaagcatgtatttga |
46661166 |
T |
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