View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_53 (Length: 263)
Name: NF2504_low_53
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 21906973 - 21906785
Alignment:
| Q |
67 |
ttctagcatatgttgcatatatcttcttccatttgaaaactcatcgaaaaatatttgatgcacaagaggttattactaattatgtaattt---------- |
156 |
Q |
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| T |
21906973 |
ttctagcatacgttgcatatatcttcttccatttgaaaactcatcgaaaaatatttgatgcacaagaggttattactaattatgtaatttcacatttgag |
21906874 |
T |
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| Q |
157 |
cacaattgtatattgatgtataccaaaggatttaattagtatcctatatcattgtacgattatcttacacatgcatccaatgatacttt |
245 |
Q |
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| T |
21906873 |
cacaattgtatattgatgtataccaaaggatttaattagtatactctatcattgtacgattatcttacacatgcatctaatgatacttt |
21906785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 21907005 - 21906975
Alignment:
| Q |
10 |
attattctatggccaattttactcttcaatt |
40 |
Q |
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| T |
21907005 |
attattctatggccaattttactcttcaatt |
21906975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 29785068 - 29784943
Alignment:
| Q |
13 |
attctatggccaattttactcttcaattgtcaagagcaagcagtgttgtcatgcttctagcatatgttgcatatatcttcttccatttgaaaactcatcg |
112 |
Q |
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| T |
29785068 |
attctattgccaattctactcttcaattgtcaagagctagcagtgttgttatgcttctagcatatgtttcatatatcttcttccaattgaaaactcatcg |
29784969 |
T |
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| Q |
113 |
aaaaatatttgatgcacaagaggtta |
138 |
Q |
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| T |
29784968 |
aaaaatatttgatgcacaagaggtta |
29784943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 1465891 - 1465838
Alignment:
| Q |
187 |
tttaattagtatcctatatcattgtacgattatcttacacatgcatccaatgat |
240 |
Q |
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| T |
1465891 |
tttaattagtatactcgatcagtgtacaattattttacacatgcatccaatgat |
1465838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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