View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_59 (Length: 250)
Name: NF2504_low_59
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32086640 - 32086532
Alignment:
| Q |
1 |
atttttcgatcaaacttcggattagtagaccttttatctctgacatcgaagggttaagnnnnnnntcaataaatttctttaaaatctatttgatcttaaa |
100 |
Q |
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| T |
32086640 |
atttttcgatcgaacttcggattagtagaccttttatctctgacatcgaagggttaagaaaaaaaacaataaatttctttaaaatctatttgatcttaaa |
32086541 |
T |
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| Q |
101 |
gcaaatcat |
109 |
Q |
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||||||||| |
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| T |
32086540 |
gcaaatcat |
32086532 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 32086477 - 32086388
Alignment:
| Q |
159 |
accatgctatccatgtgtttccaaattatgaagttagaacaattccttttgtaactnnnnnnntctaaaatcctctcctttgcttctcca |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
32086477 |
accatgctatccatgtgtttccaaattatgaagttagaacaattccttttgtaactaaaaaaatctaaaatcctctccttagcttatcca |
32086388 |
T |
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