View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_60 (Length: 250)
Name: NF2504_low_60
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16991235 - 16990998
Alignment:
| Q |
1 |
ggtctattttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataact |
100 |
Q |
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| T |
16991235 |
ggtctattttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataact |
16991136 |
T |
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| Q |
101 |
tggttaatattttaattttgatcttgatagcaaaacttgaaaaaatgctattgttccgcaataggcggcgattcaatatgaactgttgtctaattgtggc |
200 |
Q |
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| T |
16991135 |
tagataattttttaattttgatcttgatagcgaaatttgaaaaaatgctattgttccgcaataggcggcgattcaatatgaactgttgtctaattgtggc |
16991036 |
T |
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| Q |
201 |
taaaatggcgctattttgaacataccactatattttct |
238 |
Q |
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| T |
16991035 |
taaagtggcgctattttgaacataccactatattttct |
16990998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 16967070 - 16966974
Alignment:
| Q |
27 |
ggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataacttggttaatattttaattttgatct |
124 |
Q |
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| T |
16967070 |
ggttattaccgagaccaaatatatctcaccactagtggtaagcaaggtttcatgttgatttatgtaaaataactttgttaat-tttttattttgatct |
16966974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 10602941 - 10603060
Alignment:
| Q |
9 |
ttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataacttggttaat |
108 |
Q |
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| T |
10602941 |
ttgcaaattgtgtggtgtggttattactgagatcaaatatatctcaccactagtggtaagcatggtttcgtattgatttaaataaaataacttggttact |
10603040 |
T |
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| Q |
109 |
attttaattttgatcttgat |
128 |
Q |
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| T |
10603041 |
tttctgattttggtcttgat |
10603060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 16822918 - 16822832
Alignment:
| Q |
27 |
ggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataacttggttaatatttt |
113 |
Q |
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| T |
16822918 |
ggttgtcactgagatcaaatatgtctcacaactggtggtaagcacagttacatattgatttatgtaaaataacttggtgaatgtttt |
16822832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 16975867 - 16975793
Alignment:
| Q |
27 |
ggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataactt |
101 |
Q |
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| T |
16975867 |
ggttattactgagatcaaatatatctcaccactagtggtaacctcggtttcatattgatttatttaaaataactt |
16975793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 17006750 - 17006647
Alignment:
| Q |
9 |
ttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataacttggttaat |
108 |
Q |
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||||||||| ||| || |||| |||||||||||||| ||||||||| || |||||||| | ||||||| ||| | ||||| ||||||||||||||| |
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| T |
17006750 |
ttgcaaattatgtggtgtggttattactgagatcaaagatatctcacaactagtggtaaggaaggtttcat-tttgatcatgtacaataacttggttaat |
17006652 |
T |
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| Q |
109 |
atttt |
113 |
Q |
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|||| |
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| T |
17006651 |
ttttt |
17006647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35264162 - 35264399
Alignment:
| Q |
1 |
ggtctattttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgtttatttatgtaaaataact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
35264162 |
ggtctattttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacctgtggtaagcaccgtttcatgtttatttatgtaaaataacc |
35264261 |
T |
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| Q |
101 |
tggttaatattttaattttgatcttgatagcaaaacttgaaaaaatgctattgttccgcaataggcggcgattcaatatgaactgttgtctaat--tgtg |
198 |
Q |
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| T |
35264262 |
tggttaattttttaattttgatctggatagcgaaatttgaaaaaatgctattgttccgcaataggcggcgattcaatatgaagtgttgtctaattgtgtg |
35264361 |
T |
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| Q |
199 |
gctaaaatggcgctattttgaacataccactatatttt |
236 |
Q |
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| T |
35264362 |
gctaaagtggcgctattttgaacataccgctttatttt |
35264399 |
T |
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