View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_61 (Length: 249)
Name: NF2504_low_61
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 40841719 - 40841468
Alignment:
| Q |
1 |
aagaaatggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttaccccaaattggcaacctaaataaa |
100 |
Q |
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| T |
40841719 |
aagaaatggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttatcccaaattggcaacctaaataaa |
40841620 |
T |
|
| Q |
101 |
agaggataaatttcacatctcttgcactataaattcacatcc---------attttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctc |
191 |
Q |
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| T |
40841619 |
agaggataaatttcacatctcttgcactataaattcacatccatttcttccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctc |
40841520 |
T |
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| Q |
192 |
aaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatctcac |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40841519 |
aaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatttcac |
40841468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 40846126 - 40846023
Alignment:
| Q |
140 |
tccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40846126 |
tccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgttgttgcacttcctcttcttcatt |
40846027 |
T |
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| Q |
240 |
tcac |
243 |
Q |
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|||| |
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| T |
40846026 |
tcac |
40846023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 40852913 - 40852845
Alignment:
| Q |
142 |
cattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtctttta |
210 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40852913 |
cattctttcaacaaaaacaaggcaacatggcatcatctttaaggttcctcaaaatgtgtctgtctttta |
40852845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26809315 - 26809206
Alignment:
| Q |
1 |
aagaaatggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttaccccaaattggcaacctaaataaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26809315 |
aagaaattgttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttactccaaattggcaacctaaataaa |
26809216 |
T |
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| Q |
101 |
agaggataaa |
110 |
Q |
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|||||||||| |
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| T |
26809215 |
agaggataaa |
26809206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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