View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_66 (Length: 240)
Name: NF2504_low_66
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_66 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6889439 - 6889203
Alignment:
| Q |
1 |
agttggaaaatgttgaatatcacagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgttggagtagacggggatac |
100 |
Q |
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| T |
6889439 |
agttggaaaatgttgaatatcagagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgttggagtagacggggatac |
6889340 |
T |
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| Q |
101 |
atagtaccatggcgctgaaaatggagagcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaaatttatttgtagaacttaataata |
200 |
Q |
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| T |
6889339 |
atagtaccatggcgctgaaaatggagagcgcgcagtggggttgacgcattacgaagagacaaaatgcgagacacaaatttatttgaagaactt---aata |
6889243 |
T |
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| Q |
201 |
caagggtaggaagatatttccagagattgttccatctttt |
240 |
Q |
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| T |
6889242 |
taagggtaggaagatatttccagagattgttccatctttt |
6889203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6844444 - 6844262
Alignment:
| Q |
1 |
agttggaaaatgttgaatatcacagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgttggagtagacggggatac |
100 |
Q |
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| T |
6844444 |
agttggaaaatgttgaatatcagatatgggattgatacttaattgctggacattgtgtgaaacagcatatttgaccatccgttggagtaaacggtgctgc |
6844345 |
T |
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| Q |
101 |
atagtaccatggcgctgaaaatggagagcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaaatttatt |
183 |
Q |
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| T |
6844344 |
acagtaccatcgcgctcaaaatggagaatgcgcagtgagctttttgcattacgaagagacaaaatacgagacacaaatttatt |
6844262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 6848884 - 6848709
Alignment:
| Q |
1 |
agttggaaaatgttgaatatcacagctgagattgatacttaattcctggacgtgatgtgaaacagcatatttgatcatccgttggagtagacggggatac |
100 |
Q |
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||||| ||||| ||||||||||||||||| | |||| ||||| || | ||| |||||||||| ||||||||||| ||| |||| ||||||| || | | |
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| T |
6848884 |
agttgaaaaatcttgaatatcacagctgatactgatccttaactcttcgacatgatgtgaaaaagcatatttgaagatctgttgcagtagacaggtctcc |
6848785 |
T |
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| Q |
101 |
atagtaccatggcgctgaaaatggagagcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaa |
176 |
Q |
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| T |
6848784 |
acaataccatcgcgctcaaaatcgagatagcgcagtggggttgatgcattacgaagagacaaaatacgagacacaa |
6848709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 30598121 - 30598177
Alignment:
| Q |
127 |
agcgcgcagtggggttgacacattacgaagagacaaaatgcgagacacaaatttatt |
183 |
Q |
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| T |
30598121 |
agcgtgcagcggggttgacacatcacgaagacacaaaatacgagacacaaatctatt |
30598177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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