View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_69 (Length: 238)

Name: NF2504_low_69
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_69
NF2504_low_69
[»] chr2 (9 HSPs)
chr2 (17-238)||(40842256-40842477)
chr2 (23-75)||(40837510-40837562)
chr2 (28-71)||(19629240-19629283)
chr2 (28-71)||(19826141-19826184)
chr2 (34-77)||(31461385-31461428)
chr2 (34-75)||(32098390-32098431)
chr2 (34-75)||(40758970-40759011)
chr2 (38-75)||(40808282-40808319)
chr2 (34-70)||(17952788-17952824)
[»] chr5 (12 HSPs)
chr5 (88-181)||(3677198-3677291)
chr5 (28-82)||(39128580-39128634)
chr5 (28-70)||(7096214-7096256)
chr5 (37-75)||(10303751-10303789)
chr5 (37-75)||(35095865-35095903)
chr5 (34-75)||(465901-465942)
chr5 (34-75)||(10363697-10363738)
chr5 (34-75)||(11615455-11615496)
chr5 (34-75)||(21782651-21782692)
chr5 (35-75)||(14295454-14295494)
chr5 (37-81)||(17259189-17259233)
chr5 (29-73)||(29158584-29158627)
[»] chr3 (9 HSPs)
chr3 (28-71)||(45535368-45535411)
chr3 (28-72)||(1395612-1395656)
chr3 (28-75)||(2128333-2128380)
chr3 (28-75)||(32703079-32703126)
chr3 (28-75)||(36189507-36189554)
chr3 (34-75)||(905052-905093)
chr3 (34-75)||(15304429-15304470)
chr3 (34-75)||(49586998-49587039)
chr3 (34-74)||(139932-139972)
[»] chr1 (8 HSPs)
chr1 (21-77)||(23895270-23895326)
chr1 (28-75)||(36151587-36151634)
chr1 (28-75)||(50319233-50319280)
chr1 (28-74)||(4549807-4549853)
chr1 (29-75)||(49517012-49517058)
chr1 (38-75)||(14737787-14737824)
chr1 (34-75)||(46499936-46499977)
chr1 (31-75)||(10280593-10280637)
[»] chr8 (5 HSPs)
chr8 (28-75)||(14482143-14482190)
chr8 (28-75)||(34770833-34770880)
chr8 (28-75)||(42597342-42597389)
chr8 (34-75)||(11000643-11000684)
chr8 (28-72)||(1470941-1470985)
[»] chr7 (15 HSPs)
chr7 (28-75)||(2223089-2223136)
chr7 (28-75)||(24973885-24973932)
chr7 (28-75)||(28178910-28178957)
chr7 (28-75)||(35536048-35536095)
chr7 (24-75)||(43152984-43153035)
chr7 (28-70)||(2048128-2048169)
chr7 (28-66)||(2894758-2894796)
chr7 (37-75)||(12110310-12110348)
chr7 (38-75)||(21853198-21853235)
chr7 (42-75)||(23918912-23918945)
chr7 (38-75)||(39591549-39591586)
chr7 (34-71)||(42656462-42656499)
chr7 (34-75)||(43318610-43318651)
chr7 (35-75)||(30456532-30456572)
chr7 (28-72)||(49060481-49060525)
[»] chr6 (3 HSPs)
chr6 (28-75)||(24836281-24836328)
chr6 (28-75)||(29274311-29274358)
chr6 (35-75)||(5551410-5551450)
[»] chr4 (10 HSPs)
chr4 (28-75)||(35533289-35533336)
chr4 (34-69)||(36048746-36048781)
chr4 (28-70)||(51044546-51044588)
chr4 (37-75)||(54325119-54325157)
chr4 (28-77)||(9680605-9680654)
chr4 (34-75)||(17884015-17884056)
chr4 (37-70)||(32724069-32724102)
chr4 (34-75)||(34368824-34368865)
chr4 (34-75)||(39438618-39438659)
chr4 (28-72)||(6364090-6364134)
[»] scaffold0590 (1 HSPs)
scaffold0590 (28-70)||(1161-1203)
[»] scaffold0275 (1 HSPs)
scaffold0275 (28-70)||(2772-2814)
[»] scaffold0110 (1 HSPs)
scaffold0110 (28-64)||(34005-34041)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40842477 - 40842256
Alignment:
Q  17 aaacagttatgatgtagaagctatttctattacaaaagataaattaaagtcaaattgttctaaaattaaagacttgggtaaacttagatattttcttggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40842477 aaacagttatgatgtagaagctatttctattacaaaagataaattaaagtcaaattgttctaaaattaaagacttgggtaaacttagatattttcttggt 40842378  T
Q  117 ttagaaattgctaggtctcctactggtattcttctaaaccaaaggaaatacacccttgatcttctatatcagatgacactgaaacattttcttgtaaacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40842377 ttagaaattgctaggtctcctactggtattcttctaaaccaaaggaaatacacccttgatcttctatatcagatgacactgaaacattttcttgtaaacc 40842278  T
Q  217 ataatccactccttctgaacct 238  Q
    ||||||||||||||||||||||    
T  40842277 ataatccactccttctgaacct 40842256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 40837562 - 40837510
Alignment:
Q  23 ttatgatgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  40837562 ttatgatgtataagctatttctataacaaaagataaattaaagtcaaattgtt 40837510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 19629240 - 19629283
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaat 71  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  19629240 atgtagaagctatttctataacaaaaaataaattaaagtcaaat 19629283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 19826141 - 19826184
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaat 71  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  19826141 atgtagaagctatttctataacaaaaaataaattaaagtcaaat 19826184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 31461385 - 31461428
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgttct 77  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||    
T  31461385 aagctatttctataacaaaagataaaataaagtcaaattattct 31461428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 32098431 - 32098390
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| |||||||||| ||||    
T  32098431 aagctatttctataacaaaagataaaataaagtcaaagtgtt 32098390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 40758970 - 40759011
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||| || |||||||||||| |||||||||||||||    
T  40758970 aagctatttccataacaaaagataaaataaagtcaaattgtt 40759011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 40808319 - 40808282
Alignment:
Q  38 tatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  40808319 tatttctattacacaagataaaataaagtcaaattgtt 40808282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 17952824 - 17952788
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  17952824 aagctatttctataacaaaagataaaataaagtcaaa 17952788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 3677291 - 3677198
Alignment:
Q  88 acttgggtaaacttagatattttcttggtttagaaattgctaggtctcctactggtattcttctaaaccaaaggaaatacacccttgatcttct 181  Q
    |||||||||| || ||||||||  || ||||||||||| ||||| ||| || |||||||||| ||||||||||||||||| |||||||||||||    
T  3677291 acttgggtaatctaagatatttctttagtttagaaatttctaggcctcttaatggtattcttataaaccaaaggaaatactcccttgatcttct 3677198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 39128580 - 39128634
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgttctaaaat 82  Q
    ||||| |||||| |||||| |||||||||||| ||||||||||||||||| ||||    
T  39128580 atgtataagctaattctataacaaaagataaaataaagtcaaattgttctcaaat 39128634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 7096256 - 7096214
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||    
T  7096256 atgtataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 10303751 - 10303789
Alignment:
Q  37 ctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaattgtt 10303789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 35095903 - 35095865
Alignment:
Q  37 ctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaattgtt 35095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 465901 - 465942
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| |||||| ||||||||    
T  465901 aagctatttctatgacaaaagataaaataaagttaaattgtt 465942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 10363697 - 10363738
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| |||||| ||||||||    
T  10363697 aagctatttctataacaaaagataaaataaagttaaattgtt 10363738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 11615455 - 11615496
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||| ||| |||||||||||| |||||||||||||||    
T  11615455 aagctatttttataacaaaagataaaataaagtcaaattgtt 11615496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 21782692 - 21782651
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| ||||||| |||| |||||||||||||||    
T  21782692 aagctatttctataacaaaagctaaaataaagtcaaattgtt 21782651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 14295454 - 14295494
Alignment:
Q  35 agctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgtt 14295494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 17259189 - 17259233
Alignment:
Q  37 ctatttctattacaaaagataaattaaagtcaaattgttctaaaa 81  Q
    |||||||||| |||| ||| ||| |||||||||||||||||||||    
T  17259189 ctatttctataacaacagacaaaataaagtcaaattgttctaaaa 17259233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29158627 - 29158584
Alignment:
Q  29 tgtagaagctatttctattacaaaagataaattaaagtcaaattg 73  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||    
T  29158627 tgtataagctatttct-taacaaaagataaattaaagtcaaattg 29158584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 45535411 - 45535368
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaat 71  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  45535411 atgtagaagctatttctataacaaaaaataaattaaagtcaaat 45535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 1395612 - 1395656
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaatt 72  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||||    
T  1395612 atgtataagctatttctataacaaaagataaaataaagtcaaatt 1395656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 2128380 - 2128333
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| |||||||||||| |||||| ||||||||    
T  2128380 atgtataagctatttctataacaaaagataaaataaagttaaattgtt 2128333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 32703079 - 32703126
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||||| |||||||||| |||| ||||||||||    
T  32703079 atgtataagctatttctattataaaagataaaataaactcaaattgtt 32703126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 36189507 - 36189554
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||| |||||||||||||| |||||| ||||||||    
T  36189507 atgtataagctatttctcttacaaaagataaaataaagttaaattgtt 36189554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 905093 - 905052
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| ||||||||| |||||    
T  905093 aagctatttctataacaaaagataaaataaagtcaatttgtt 905052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 15304470 - 15304429
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| |||||| ||||||||    
T  15304470 aagctatttctataacaaaagataaaataaagttaaattgtt 15304429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 49587039 - 49586998
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| |||||||||| ||||    
T  49587039 aagctatttctataacaaaagataaaataaagtcaaactgtt 49586998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 139932 - 139972
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgt 74  Q
    ||||||||||||||||| |||||||| |||||| |||||||    
T  139932 aagctatttctattacacaagataaaataaagtaaaattgt 139972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 23895270 - 23895326
Alignment:
Q  21 agttatgatgtagaagctatttctattacaaaagataaattaaagtcaaattgttct 77  Q
    |||||| ||||| ||||||||||||| |||||||||||| |||| ||||| ||||||    
T  23895270 agttattatgtataagctatttctataacaaaagataaaataaattcaaactgttct 23895326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 36151634 - 36151587
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| |||||||||| || |||||||||||| |||||||||||||||    
T  36151634 atgtataagctatttcaataacaaaagataaaataaagtcaaattgtt 36151587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 50319233 - 50319280
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| |||||||||||| ||||||||| |||||    
T  50319233 atgtataagctatttctataacaaaagataaaataaagtcaagttgtt 50319280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 4549807 - 4549853
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgt 74  Q
    ||||| ||||||||||||| |||||||||||| |||||| |||||||    
T  4549807 atgtacaagctatttctataacaaaagataaaataaagttaaattgt 4549853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 49517012 - 49517058
Alignment:
Q  29 tgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||| ||| ||||||||| |||||||||||| |||||||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgtt 49517058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 14737824 - 14737787
Alignment:
Q  38 tatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  14737824 tatttctataacaaaagataaaataaagtcaaattgtt 14737787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 46499977 - 46499936
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| | |||||||||| |||||||||||||||    
T  46499977 aagctatttctataagaaaagataaaataaagtcaaattgtt 46499936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 10280593 - 10280637
Alignment:
Q  31 tagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||||||||| |||||||||||| |||||| || |||||    
T  10280593 tagaagctatttctataacaaaagataaagtaaagttaagttgtt 10280637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 14482143 - 14482190
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||||    
T  14482143 atgtataaactatttctataacaaaagataaaataaagtcaaattgtt 14482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 34770833 - 34770880
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| || ||||||| ||||||||||||||| |||||||||||||||    
T  34770833 atgtaaaaactatttccattacaaaagataaaataaagtcaaattgtt 34770880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 42597342 - 42597389
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| |||||||||||| |||||| ||||||||    
T  42597342 atgtataagctatttctataacaaaagataaaataaagtaaaattgtt 42597389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 11000684 - 11000643
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||| || |||||||||||| |||||||||||||||    
T  11000684 aagctatttccataacaaaagataaaataaagtcaaattgtt 11000643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 1470985 - 1470941
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaatt 72  Q
    ||||| ||||||||||||| | |||||||||| ||||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaatt 1470941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 2223089 - 2223136
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||||||||    
T  2223089 atgtataagctatttctataacaaaagataaagaaaagtcaaattgtt 2223136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 24973885 - 24973932
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| |||||||||||| |||| ||||||||||    
T  24973885 atgtaaaagctatttctataacaaaagataaaataaattcaaattgtt 24973932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 28178910 - 28178957
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| |||||||||||| |||||||| ||||||    
T  28178910 atgtataagctatttctataacaaaagataaaataaagtcatattgtt 28178957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 35536048 - 35536095
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||||||||||| ||| |||||||| |||||||||||||||    
T  35536048 atgtataagctatttctataacataagataaaataaagtcaaattgtt 35536095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 43153035 - 43152984
Alignment:
Q  24 tatgatgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||| |||| ||||||||||||| |||||||||||| |||||| ||||||||    
T  43153035 tatgttgtataagctatttctataacaaaagataaaataaagttaaattgtt 43152984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 2048169 - 2048128
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  2048169 atgtataagctatttct-ttacaaaagataaattaaagtcaaa 2048128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 2894758 - 2894796
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagt 66  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  2894758 atgtataagctatttctataacaaaagataaattaaagt 2894796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 12110310 - 12110348
Alignment:
Q  37 ctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  12110310 ctatttctattacacaagataaaataaagtcaaattgtt 12110348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 21853235 - 21853198
Alignment:
Q  38 tatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  21853235 tatttctattacaaaagataaaataaagttaaattgtt 21853198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 23918912 - 23918945
Alignment:
Q  42 tctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||||||||||| |||||||||||||||    
T  23918912 tctattacaaaagataaaataaagtcaaattgtt 23918945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 39591586 - 39591549
Alignment:
Q  38 tatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaattgtt 39591549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 42656462 - 42656499
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaat 71  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  42656462 aagctatttctataacaaaagataaaataaagtcaaat 42656499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 43318651 - 43318610
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| ||||| |||||| |||||||||||||||    
T  43318651 aagctatttctataacaaatgataaaataaagtcaaattgtt 43318610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 30456572 - 30456532
Alignment:
Q  35 agctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  30456572 agctatttctaaaacaaaagataaaataaagtcaaattgtt 30456532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 49060481 - 49060525
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaatt 72  Q
    ||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  49060481 atgtataagctatttctataacaaaaaataaaataaagtcaaatt 49060525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 24836328 - 24836281
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||| ||||||||| |||||||||||| |||||||||||||||    
T  24836328 atgtataagttatttctataacaaaagataaaataaagtcaaattgtt 24836281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 29274358 - 29274311
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| |||||||||||||  ||||||||||| |||||||||||||||    
T  29274358 atgtataagctatttctatagcaaaagataaaataaagtcaaattgtt 29274311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 5551410 - 5551450
Alignment:
Q  35 agctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    |||||||| ||| |||||||||||| |||||||||||||||    
T  5551410 agctatttatataacaaaagataaaataaagtcaaattgtt 5551450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 35533336 - 35533289
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||| ||||| || |||||| ||||||||||||||||||||||||||    
T  35533336 atgtataagctgttcctattataaaagataaattaaagtcaaattgtt 35533289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 36048746 - 36048781
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaa 69  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36048746 aagctatttctataacaaaagataaattaaagtcaa 36048781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 51044588 - 51044546
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||    
T  51044588 atgtataagctatttctataacaaaagataaaataaagtcaaa 51044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 54325157 - 54325119
Alignment:
Q  37 ctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  54325157 ctatttctattacaaaagataaaataaagtcaaactgtt 54325119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 9680605 - 9680654
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaattgttct 77  Q
    ||||| |||||||||| || | |||||||||| |||||||||||||||||    
T  9680605 atgtataagctatttcgataataaaagataaaataaagtcaaattgttct 9680654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 17884015 - 17884056
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| |||||||||||| |||||| ||||||||    
T  17884015 aagctatttctataacaaaagataaaataaagttaaattgtt 17884056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 32724069 - 32724102
Alignment:
Q  37 ctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||||||||||||||||||||| ||||||||||    
T  32724069 ctatttctattacaaaagataaaataaagtcaaa 32724102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 34368824 - 34368865
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| ||||||||||||  ||||||||||||||    
T  34368824 aagctatttctataacaaaagataaaacaaagtcaaattgtt 34368865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 39438659 - 39438618
Alignment:
Q  34 aagctatttctattacaaaagataaattaaagtcaaattgtt 75  Q
    ||||||||||||| ||| |||||||| |||||||||||||||    
T  39438659 aagctatttctataacataagataaaataaagtcaaattgtt 39438618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 6364090 - 6364134
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaatt 72  Q
    ||||| ||||||||||||| |||||||||||| |||||| |||||    
T  6364090 atgtataagctatttctataacaaaagataaaataaagtgaaatt 6364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 1203 - 1161
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||    
T  1203 atgtataagctatttctataacaaaagataaaataaagtcaaa 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 2772 - 2814
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaagtcaaa 70  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||    
T  2772 atgtataagctatttctataacaaaagataaaataaagtcaaa 2814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 34041 - 34005
Alignment:
Q  28 atgtagaagctatttctattacaaaagataaattaaa 64  Q
    |||||||||||||||||||| |||||||| |||||||    
T  34041 atgtagaagctatttctatttcaaaagatgaattaaa 34005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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