View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_70 (Length: 236)
Name: NF2504_low_70
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16991464 - 16991684
Alignment:
| Q |
1 |
aattaaaattaaaactaaaaagcaaagatcaaatttaaatgttcttagaggaggattaccatggattcagcgttagattctctactggctgtatcaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16991464 |
aattaaaattaaaactaaaaagcaaagatcaaatttaaatgttcttagaggaggattaccatggattcagcgttagattctctactggctgtatcaaatt |
16991563 |
T |
|
| Q |
101 |
catcccataacagttcctcctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagac |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16991564 |
catcccataacagttcctcctcctcttcctccttggtcttttgcacgatgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagac |
16991663 |
T |
|
| Q |
201 |
tggtggtggccgtgtatgatg |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
16991664 |
tggtggtggccgtgtatgatg |
16991684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 16976132 - 16976345
Alignment:
| Q |
6 |
aaattaaaactaaaaagcaaagatcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcat |
103 |
Q |
| |
|
||||||| | ||||| |||||| |||||||| |||||||||| ||||| ||||||| ||||| |||| | ||||||||| |||||| || ||||||| |
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| T |
16976132 |
aaattaacattaaaacgcaaagttcaaattttaatgttcttaaagaggatgattaccttggatacagcttctgattctctaagggctgtttccaattcat |
16976231 |
T |
|
| Q |
104 |
cccataacagttcctcctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagactgg |
203 |
Q |
| |
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|||||| || ||| | ||| || |||||||| |||||| || | ||| ||||||| |||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
16976232 |
cccatatcacttcattctcttcctcctccttagtcttttcaactttttccgcctttttgaggctccatatccgttcatgaggtgtgtccacagaaactgg |
16976331 |
T |
|
| Q |
204 |
tggtggccgtgtat |
217 |
Q |
| |
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||||||| |||||| |
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| T |
16976332 |
tggtggctgtgtat |
16976345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 10602698 - 10602551
Alignment:
| Q |
29 |
tcaaatttaaatgttcttagag--gaggattaccatggattcagcgttagattctctactggctgtatcaaattcatcccataacagttcctcctcctct |
126 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||| ||| | |||||| |
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| T |
10602698 |
tcaaatttaaatgttcttaaagtggaggattaccatggatacagcgtcagattctctaagaactgtatctaattcatcccataacacttcgttctcctcc |
10602599 |
T |
|
| Q |
127 |
tcctccttggtctttcgcacgatgtccacctttttaaggctccatatc |
174 |
Q |
| |
|
|||||| |||||||| |||| | |||||||| ||||||||||||||| |
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|
| T |
10602598 |
tcctccatggtcttttgcactttttccaccttcttaaggctccatatc |
10602551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 16967326 - 16967539
Alignment:
| Q |
6 |
aaattaaaactaaaaagcaaagatcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcat |
103 |
Q |
| |
|
||||||| | ||||| |||||| |||||||| |||||||||| ||||| ||||||| || || |||| | |||||||| || || || ||||||| |
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|
| T |
16967326 |
aaattaacattaaaacgcaaagttcaaattttaatgttcttaaagaggatgattaccttgcatacagcttctaattctctaagggtcgtttccaattcat |
16967425 |
T |
|
| Q |
104 |
cccataacagttcctcctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagactgg |
203 |
Q |
| |
|
||||||||| ||| | ||| || |||||||| ||||| | || | ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||| |
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|
| T |
16967426 |
cccataacacttcattctcttcctcctccttagtcttctgaactttttccacctttttgaggctccatatccgttcatgaggtgtgtccacagaaactgg |
16967525 |
T |
|
| Q |
204 |
tggtggccgtgtat |
217 |
Q |
| |
|
||||||| |||||| |
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|
| T |
16967526 |
tggtggctgtgtat |
16967539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 16823154 - 16823301
Alignment:
| Q |
29 |
tcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcatcccataacagttcctcctcctct |
126 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||| ||||||||| | || |||||||||| |||||| |||| |
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|
| T |
16823154 |
tcaaatttaaatgttcttaaagagcaggattaccatggattcagcttctgattctctaagggctgtatccatttgatcccataacggttcctgctccaac |
16823253 |
T |
|
| Q |
127 |
tcctccttggtctttcgcacgatgtccacctttttaaggctccatatc |
174 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
16823254 |
tcctctttggtcttttgcacttcttccacctttttaaggctccatatc |
16823301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 17007062 - 17007162
Alignment:
| Q |
90 |
tgtatcaaattcatcccataacagttcctcctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatccgttcacgaggtgtc |
189 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||| || | |||||| || ||| |||| | |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17007062 |
tgtatccaattcatcccataacggttcctgctcttcctgctccttcgtttttagcaccttttccacctttttaaggctccatatccgttcatgaggtgtc |
17007161 |
T |
|
| Q |
190 |
t |
190 |
Q |
| |
|
| |
|
|
| T |
17007162 |
t |
17007162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 16976957 - 16977111
Alignment:
| Q |
22 |
gcaaagatcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcatcccataacagttcctc |
119 |
Q |
| |
|
|||||| |||||||||||||||| || ||| ||||||||| || || |||| || |||||||| ||| | || | |||||||||||||| |||||| |
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|
| T |
16976957 |
gcaaagttcaaatttaaatgttcctaaagagaaggattaccttgtatacagcttttgattctcttagggccatctccatttcatcccataacacttcctc |
16977056 |
T |
|
| Q |
120 |
ctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatc |
174 |
Q |
| |
|
|||||| ||||||||||||||| |||| | |||||||||||| |||||||||| |
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|
| T |
16977057 |
ctcctcatcctccttggtctttggcacttttcccacctttttaaagctccatatc |
16977111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 16968026 - 16968195
Alignment:
| Q |
7 |
aattaaaactaaaaagcaaagatcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcatc |
104 |
Q |
| |
|
|||||||| ||| | |||||| |||||||||||||||| || ||| |||| |||| ||||| || | || ||||||||| ||| ||| || |||||||| |
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|
| T |
16968026 |
aattaaaattaatatgcaaagttcaaatttaaatgttcctaaagagaaggagtaccttggatacaacttttgattctctaatggttgtctccaattcatc |
16968125 |
T |
|
| Q |
105 |
ccataacagttcctcctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatc |
174 |
Q |
| |
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| ||||| || | ||| || ||||| ||||||||| |||| | |||||||||||| |||||||||| |
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|
| T |
16968126 |
ctgtaacacatcattctcttcatcctcgttggtcttttgcacttttcccacctttttaaagctccatatc |
16968195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 35263911 - 35263698
Alignment:
| Q |
6 |
aaattaaaactaaaaagcaaagatcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcat |
103 |
Q |
| |
|
||||||||| | |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
35263911 |
aaattaaaatttaaaagcaaagttcaaatttatatgttcttatagaggaggattaccatggattcagcgtcagattctctacgggctgtatcaaattcat |
35263812 |
T |
|
| Q |
104 |
cccataacagttcctcctcctcttcctccttggtctttcgcacgatgtccacctttttaaggctccatatccgttcacgaggtgtctccacagagactgg |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35263811 |
cccataacacttcctcctcctcttcctccttggtcttttctactttttccacctttttaaggctccatatccgttcacgaggtgtctccacagagactgg |
35263712 |
T |
|
| Q |
204 |
tggtggccgtgtat |
217 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
35263711 |
tggtggccatgtat |
35263698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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