View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_74 (Length: 227)

Name: NF2504_low_74
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_74
NF2504_low_74
[»] chr5 (3 HSPs)
chr5 (101-202)||(34731010-34731113)
chr5 (14-104)||(34731251-34731341)
chr5 (40-102)||(7010701-7010763)
[»] chr2 (2 HSPs)
chr2 (14-104)||(40054506-40054596)
chr2 (34-102)||(36264549-36264617)
[»] chr3 (3 HSPs)
chr3 (14-104)||(32490885-32490975)
chr3 (40-89)||(29282776-29282825)
chr3 (34-102)||(7038588-7038656)
[»] chr1 (4 HSPs)
chr1 (14-102)||(12855278-12855366)
chr1 (24-79)||(4076399-4076454)
chr1 (38-104)||(49287979-49288045)
chr1 (25-106)||(9383281-9383362)
[»] chr4 (3 HSPs)
chr4 (40-102)||(36625605-36625667)
chr4 (40-105)||(45413839-45413904)
chr4 (14-106)||(33451303-33451395)
[»] chr7 (2 HSPs)
chr7 (52-106)||(39644884-39644938)
chr7 (34-106)||(39594615-39594687)
[»] chr8 (1 HSPs)
chr8 (43-102)||(26543915-26543975)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 34731113 - 34731010
Alignment:
Q  101 tagtttggttgggtttcatgatgagaacataatcaatcaagttgatatacatttgattaatcctaccatt--ttttgtttgagaaccaaaccaaattgat 198  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  34731113 tagtttggttgggtttcacgatgagaacataatcaatcaagttgatatacatttgattaatcctaccattttttttgtctgagaaccaaaccaaattgat 34731014  T
Q  199 taca 202  Q
    ||||    
T  34731013 taca 34731010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 34731341 - 34731251
Alignment:
Q  14 caaaggattgataggatataattagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagt 104  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  34731341 caaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaacaagggatttaaataggatatgatagt 34731251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 7010701 - 7010763
Alignment:
Q  40 aataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgata 102  Q
    |||||| ||| |||||| | || ||||||||||||||| ||||||||||| || |||||||||    
T  7010701 aataggattattttatcatatcttattagtgcaccaaataagagatttaagtaggatatgata 7010763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 40054506 - 40054596
Alignment:
Q  14 caaaggattgataggatataattagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagt 104  Q
    ||||||||||||||||||  |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||| |||||    
T  40054506 caaaggattgataggataggattaacaataggtttagtttatcattttctattggtgcaccaaacaagagatttaaataggatataatagt 40054596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 36264617 - 36264549
Alignment:
Q  34 attagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgata 102  Q
    |||| |||||| ||||||||||| |||| |||||||||| |||| ||||||||||| || | |||||||    
T  36264617 attatcaatagatttagtttatcttttcttattagtgcaacaaataagagatttaagtaggctatgata 36264549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 32490975 - 32490885
Alignment:
Q  14 caaaggattgataggatataattagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagt 104  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||| |||| |||||||||||||  ||||||||||  ||||||||||    
T  32490975 caaaggattgataggatagaattagcaataggtttcgattatcctttcatattggtgcaccaaacaaaggatttaaatagaatatgatagt 32490885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 29282776 - 29282825
Alignment:
Q  40 aataggtttagtttatcctttcctattagtgcaccaaacaagagatttaa 89  Q
    |||||||||| |||||||||||||||  |||||| |||||| ||||||||    
T  29282776 aataggtttattttatcctttcctataggtgcacaaaacaaaagatttaa 29282825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 7038656 - 7038588
Alignment:
Q  34 attagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgata 102  Q
    ||||| |||||||||| |||||| | ||||||||||| |||||| ||  |||||||||| |||| ||||    
T  7038656 attagtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaataggataagata 7038588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 12855278 - 12855366
Alignment:
Q  14 caaaggattgataggatataattagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgata 102  Q
    ||||||||  ||||||||| || || ||||||||| || |||||||||||||| ||||| |||||||  |||||||||| |||||||||    
T  12855278 caaaggatgaataggatatgataagtaataggtttggtgtatcctttcctattggtgcatcaaacaatggatttaaataggatatgata 12855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 4076399 - 4076454
Alignment:
Q  24 ataggatataattagcaataggtttagtttatcctttcctattagtgcaccaaaca 79  Q
    ||||||||  ||||| |||||||||| ||||||||||||||||  |||||||||||    
T  4076399 ataggataggattagtaataggtttaatttatcctttcctattgatgcaccaaaca 4076454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 49288045 - 49287979
Alignment:
Q  38 gcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagt 104  Q
    |||||||||||| |||||| |||  |||| |||||||||| || | ||||||||| |||||||||||    
T  49288045 gcaataggtttattttatcattttgtattggtgcaccaaataacaaatttaaataggatatgatagt 49287979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 9383281 - 9383362
Alignment:
Q  25 taggatataattagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagttt 106  Q
    |||||||  ||||| ||| |||||| ||||||| |||||||| |||||||||||||  |||||||  | ||| |||||||||    
T  9383281 taggataagattagaaattggtttaatttatccgttcctattggtgcaccaaacaatggatttaatcaggatgtgatagttt 9383362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 36625605 - 36625667
Alignment:
Q  40 aataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgata 102  Q
    |||||||||| |||||| | ||||||||||||||||||||| | ||||||||| |||||||||    
T  36625605 aataggtttaatttatcatatcctattagtgcaccaaacaacaaatttaaataggatatgata 36625667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 45413839 - 45413904
Alignment:
Q  40 aataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagtt 105  Q
    |||||||||| |||||||||||||||| |||||||||||||  |||| ||  | ||||||||||||    
T  45413839 aataggtttaatttatcctttcctattggtgcaccaaacaaccgattgaatcaagatatgatagtt 45413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 33451395 - 33451303
Alignment:
Q  14 caaaggattgataggatataattagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagttt 106  Q
    ||||||||  |||||||| || ||| |||||||||| |||||| | || |||| |||||||||||||   |||||| || |||| ||||||||    
T  33451395 caaaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgcaccaaacaacgaatttaagtaggatacgatagttt 33451303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 39644938 - 39644884
Alignment:
Q  52 ttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagttt 106  Q
    ||||||||| ||||| | ||||||||||| | ||| |||||||||||||||||||    
T  39644938 ttatccttttctattggcgcaccaaacaacaaattgaaatatgatatgatagttt 39644884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 39594687 - 39594615
Alignment:
Q  34 attagcaataggtttagtttatcctttcctattagtgcaccaaacaagagatttaaatatgatatgatagttt 106  Q
    ||||| |||||||||| |||| | | || |||| |||||||||||||  ||||||| || |||||||||||||    
T  39594687 attagtaataggtttaatttagcatatcttattggtgcaccaaacaacggatttaagtaggatatgatagttt 39594615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 26543975 - 26543915
Alignment:
Q  43 aggtttagtttatcc-tttcctattagtgcaccaaacaagagatttaaatatgatatgata 102  Q
    ||||||| ||||||| ||||||||| ||||||||||||||| |||| | || |||||||||    
T  26543975 aggtttaatttatccctttcctattggtgcaccaaacaagaaatttgagtaggatatgata 26543915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University