View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_78 (Length: 205)
Name: NF2504_low_78
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 3402690 - 3402865
Alignment:
| Q |
15 |
gatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggcaca |
114 |
Q |
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| T |
3402690 |
gatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggcaca |
3402789 |
T |
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| Q |
115 |
caagctacaccaatataagccatgtgtacaacaaaattagaatagaaaatattagcaagaattcataatttataat |
190 |
Q |
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| T |
3402790 |
caagctacaacaatataagccatgtgtacaacaaaattagaatagaaaatattagcaagaattcataatttataat |
3402865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 3389403 - 3389569
Alignment:
| Q |
15 |
gatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggcaca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3389403 |
gatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggaaca |
3389502 |
T |
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| Q |
115 |
caagctacaccaatataagccatgtgtacaacaaaattagaatagaaaatattagcaagaattcataatt |
184 |
Q |
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| T |
3389503 |
caagctacaataacataagccatgtgtacaa---agttagaatcaatgatattagcaagaatttataatt |
3389569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 3369436 - 3369549
Alignment:
| Q |
24 |
tccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggcacacaagctaca |
123 |
Q |
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| T |
3369436 |
tccacaataataaccttaccatttagaggcaaagctttgtgacaattccttaaaatttctaagcatttttcatctggccaattatggcacacaagctaca |
3369535 |
T |
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| Q |
124 |
ccaatataagccat |
137 |
Q |
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||||||| |||| |
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| T |
3369536 |
aaaatataacccat |
3369549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 3348122 - 3348207
Alignment:
| Q |
24 |
tccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
109 |
Q |
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||||||| ||| ||||| |||||| |||||||||||||| ||||||| | || |||||| |||||||||||||||||||||||| |
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| T |
3348122 |
tccacaagaatcacctttccattttgaggcaaagctttgtaacaattgctaaatatttctatgcatttttcatccgaccaattatg |
3348207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 3297936 - 3298012
Alignment:
| Q |
36 |
accttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
112 |
Q |
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| T |
3297936 |
acctttccatttggaggtaaagctttgtaacaattgcttaagatttctatgcatttttcatccgaccagttgtggca |
3298012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 43365628 - 43365532
Alignment:
| Q |
16 |
atatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
112 |
Q |
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||||||| ||||||||||| || || ||||||| | | |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
43365628 |
atatgaactccacaataatcacttttccatttggtgatagagctttgtgacaattgcttaaaaattctatgcatttttcatccgaccaattatggca |
43365532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 23994463 - 23994381
Alignment:
| Q |
30 |
ataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
112 |
Q |
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||||||||||| ||||||| || |||||||||||||||||| ||||| ||| || ||||| |||||||||||| |||||||| |
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| T |
23994463 |
ataatgaccttcccatttggtggtaaagctttgtgacaattgcttaaaatttgtatgcattgttcatccgaccagttatggca |
23994381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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