View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2504_low_8 (Length: 590)

Name: NF2504_low_8
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2504_low_8
NF2504_low_8
[»] chr1 (25 HSPs)
chr1 (472-557)||(38894754-38894839)
chr1 (472-558)||(47134703-47134789)
chr1 (472-558)||(19322346-19322432)
chr1 (473-557)||(33075659-33075743)
chr1 (495-558)||(46626326-46626389)
chr1 (472-557)||(22198910-22198995)
chr1 (469-557)||(1826789-1826877)
chr1 (479-543)||(5426222-5426286)
chr1 (472-558)||(16300388-16300474)
chr1 (489-554)||(28570741-28570806)
chr1 (508-557)||(29844884-29844933)
chr1 (508-557)||(10766221-10766270)
chr1 (473-557)||(42678374-42678458)
chr1 (470-543)||(1367288-1367361)
chr1 (472-558)||(52306068-52306154)
chr1 (475-544)||(43116050-43116119)
chr1 (472-543)||(4890097-4890168)
chr1 (472-543)||(17364620-17364691)
chr1 (475-558)||(19400733-19400816)
chr1 (472-543)||(29188317-29188388)
chr1 (472-543)||(33359699-33359770)
chr1 (508-558)||(50557862-50557911)
chr1 (473-541)||(41918924-41918992)
chr1 (472-543)||(10698135-10698206)
chr1 (475-558)||(51971274-51971356)
[»] scaffold0051 (1 HSPs)
scaffold0051 (472-543)||(62061-62132)
[»] chr4 (34 HSPs)
chr4 (472-543)||(12682772-12682843)
chr4 (475-558)||(13171627-13171710)
chr4 (472-558)||(3757725-3757811)
chr4 (472-558)||(50119959-50120045)
chr4 (478-543)||(46104184-46104249)
chr4 (489-557)||(8956932-8957000)
chr4 (489-557)||(8986904-8986972)
chr4 (489-557)||(37349802-37349870)
chr4 (472-543)||(2116088-2116159)
chr4 (485-544)||(35833429-35833488)
chr4 (472-558)||(51347487-51347573)
chr4 (472-557)||(24948289-24948374)
chr4 (503-558)||(30529280-30529335)
chr4 (472-558)||(3821200-3821286)
chr4 (489-554)||(9888895-9888960)
chr4 (472-557)||(39406234-39406319)
chr4 (508-557)||(53991554-53991603)
chr4 (470-557)||(29712366-29712454)
chr4 (470-558)||(36743203-36743291)
chr4 (495-558)||(24547353-24547416)
chr4 (472-558)||(20588561-20588647)
chr4 (508-557)||(578607-578656)
chr4 (508-553)||(35716305-35716350)
chr4 (489-557)||(50033697-50033764)
chr4 (503-558)||(17730463-17730518)
chr4 (493-543)||(5752471-5752521)
chr4 (472-558)||(39716719-39716805)
chr4 (477-558)||(15704115-15704196)
chr4 (473-558)||(35498534-35498619)
chr4 (472-557)||(43021891-43021976)
chr4 (496-558)||(16896008-16896070)
chr4 (473-527)||(47560251-47560305)
chr4 (154-194)||(27881010-27881050)
chr4 (495-543)||(52799047-52799095)
[»] chr5 (16 HSPs)
chr5 (478-558)||(12422346-12422426)
chr5 (489-557)||(6305452-6305520)
chr5 (476-558)||(42977834-42977913)
chr5 (489-557)||(43138549-43138617)
chr5 (495-558)||(30754431-30754494)
chr5 (471-554)||(36886974-36887057)
chr5 (470-557)||(12592471-12592558)
chr5 (472-558)||(17643387-17643473)
chr5 (489-554)||(754450-754515)
chr5 (473-543)||(3088048-3088118)
chr5 (473-519)||(34727376-34727422)
chr5 (473-543)||(33709830-33709900)
chr5 (473-558)||(25698719-25698804)
chr5 (471-543)||(41689273-41689345)
chr5 (472-558)||(30140501-30140587)
chr5 (509-543)||(34715632-34715666)
[»] chr3 (20 HSPs)
chr3 (471-543)||(26777867-26777939)
chr3 (472-543)||(4139364-4139435)
chr3 (472-543)||(8393562-8393633)
chr3 (495-558)||(19368943-19369006)
chr3 (472-558)||(11602166-11602252)
chr3 (472-558)||(29530563-29530649)
chr3 (478-543)||(53800504-53800569)
chr3 (508-557)||(11955528-11955577)
chr3 (475-558)||(28981819-28981902)
chr3 (495-557)||(35855226-35855288)
chr3 (508-553)||(22473679-22473724)
chr3 (495-558)||(26102152-26102215)
chr3 (472-558)||(8528105-8528191)
chr3 (493-543)||(18682509-18682559)
chr3 (473-543)||(19895662-19895732)
chr3 (472-518)||(39838225-39838271)
chr3 (495-543)||(22519211-22519259)
chr3 (496-558)||(40831928-40831990)
chr3 (473-543)||(33872205-33872275)
chr3 (508-544)||(15321259-15321295)
[»] chr7 (22 HSPs)
chr7 (472-543)||(688062-688133)
chr7 (472-543)||(4848347-4848418)
chr7 (471-543)||(49146139-49146212)
chr7 (473-557)||(29467751-29467835)
chr7 (489-557)||(24684636-24684704)
chr7 (508-557)||(3791514-3791563)
chr7 (472-544)||(46197415-46197488)
chr7 (478-558)||(29684115-29684195)
chr7 (473-557)||(44804520-44804604)
chr7 (495-558)||(34872191-34872254)
chr7 (503-558)||(35156997-35157052)
chr7 (495-543)||(11840464-11840512)
chr7 (495-543)||(21600987-21601035)
chr7 (470-543)||(9143470-9143546)
chr7 (473-558)||(39651150-39651235)
chr7 (471-543)||(39276611-39276683)
chr7 (487-542)||(31900003-31900058)
chr7 (495-543)||(17169046-17169094)
chr7 (472-543)||(48529950-48530021)
chr7 (479-549)||(42912138-42912208)
chr7 (508-544)||(42684820-42684856)
chr7 (508-544)||(47175506-47175542)
[»] chr6 (13 HSPs)
chr6 (472-543)||(4107953-4108024)
chr6 (472-543)||(6969312-6969383)
chr6 (473-558)||(25529241-25529326)
chr6 (472-543)||(28573845-28573916)
chr6 (495-557)||(4897497-4897559)
chr6 (471-558)||(9737754-9737841)
chr6 (479-549)||(34316957-34317027)
chr6 (484-543)||(9981276-9981335)
chr6 (472-543)||(1218517-1218588)
chr6 (472-543)||(15045563-15045634)
chr6 (472-543)||(24443926-24443997)
chr6 (508-558)||(33328279-33328329)
chr6 (508-558)||(35133209-35133258)
[»] chr2 (15 HSPs)
chr2 (472-557)||(32677186-32677271)
chr2 (479-558)||(19486113-19486192)
chr2 (495-558)||(19486211-19486274)
chr2 (495-557)||(17836989-17837051)
chr2 (508-557)||(9920912-9920961)
chr2 (472-558)||(10876573-10876657)
chr2 (472-543)||(28607220-28607291)
chr2 (470-558)||(10050191-10050279)
chr2 (495-558)||(42781033-42781096)
chr2 (474-543)||(9545792-9545861)
chr2 (495-543)||(2952779-2952827)
chr2 (477-540)||(18096495-18096558)
chr2 (472-558)||(24520865-24520951)
chr2 (473-543)||(4292799-4292869)
chr2 (504-544)||(5250354-5250394)
[»] scaffold0759 (1 HSPs)
scaffold0759 (472-543)||(5908-5979)
[»] chr8 (23 HSPs)
chr8 (471-558)||(36776402-36776489)
chr8 (495-557)||(40587695-40587757)
chr8 (489-557)||(8760717-8760785)
chr8 (489-557)||(25836268-25836336)
chr8 (482-558)||(41972965-41973041)
chr8 (472-543)||(4466437-4466508)
chr8 (495-558)||(25346056-25346119)
chr8 (472-558)||(24053913-24053999)
chr8 (478-543)||(7389203-7389268)
chr8 (478-543)||(25616515-25616580)
chr8 (489-557)||(1942805-1942873)
chr8 (473-543)||(25620731-25620801)
chr8 (489-554)||(8162781-8162846)
chr8 (489-557)||(32844165-32844233)
chr8 (475-558)||(40616096-40616179)
chr8 (472-549)||(19243234-19243311)
chr8 (472-549)||(19316418-19316495)
chr8 (495-558)||(9472174-9472236)
chr8 (511-558)||(42245734-42245781)
chr8 (503-549)||(45435020-45435066)
chr8 (478-549)||(45298263-45298334)
chr8 (496-558)||(44389007-44389069)
chr8 (473-558)||(18378804-18378889)
[»] scaffold0385 (1 HSPs)
scaffold0385 (495-557)||(8303-8365)
[»] scaffold0381 (1 HSPs)
scaffold0381 (489-554)||(9585-9650)
[»] scaffold0009 (2 HSPs)
scaffold0009 (472-557)||(225434-225519)
scaffold0009 (495-558)||(108569-108632)
[»] scaffold0057 (1 HSPs)
scaffold0057 (472-543)||(20596-20667)
[»] scaffold0429 (1 HSPs)
scaffold0429 (472-549)||(12960-13036)
[»] scaffold0045 (1 HSPs)
scaffold0045 (475-553)||(18873-18953)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 472 - 557
Target Start/End: Original strand, 38894754 - 38894839
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38894754 atctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 47134703 - 47134789
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  47134703 atctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttg 47134789  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 19322432 - 19322346
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  ||| | ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19322432 atctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttg 19322346  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 473 - 557
Target Start/End: Complemental strand, 33075743 - 33075659
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||| |||| |||   ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33075743 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 46626389 - 46626326
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46626389 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 46626326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 22198995 - 22198910
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||| |||| |||   ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22198995 atctatatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 469 - 557
Target Start/End: Original strand, 1826789 - 1826877
Alignment:
Q  469 gacatctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||| |||| |||  |||||||| |||| |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  1826789 gacatctatatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaatctatttattggtt 1826877  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 5426222 - 5426286
Alignment:
Q  479 tactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5426222 tactaatataacagttaatgtccattgattttaccattttgcccttagaaggggcaatttggtaa 5426286  T

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Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 16300388 - 16300474
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| |||| ||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||  |||| ||||||||    
T  16300388 atctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttg 16300474  T

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Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 554
Target Start/End: Original strand, 28570741 - 28570806
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattg 554  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28570741 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

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Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 29844933 - 29844884
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29844933 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 10766221 - 10766270
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10766221 tttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

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Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 473 - 557
Target Start/End: Original strand, 42678374 - 42678458
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||| ||||||||   |||||||  ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  42678374 tctatatacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggtt 42678458  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 470 - 543
Target Start/End: Original strand, 1367288 - 1367361
Alignment:
Q  470 acatctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  1367288 acatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 1367361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 52306068 - 52306154
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| ||||||||   ||| ||| || | |||||||||||||||||||||||||||||||| |||  |||| ||||||||    
T  52306068 atctatatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttg 52306154  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 544
Target Start/End: Original strand, 43116050 - 43116119
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaat 544  Q
    ||||||||||||||||| |  ||||||||||| ||| | ||||||||||||  |||||||||||||||||    
T  43116050 tatatactaatataaaaatacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaat 43116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 4890097 - 4890168
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| |||| |||||||||||||| |||| ||||||||||||||||    
T  4890097 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaa 4890168  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 17364691 - 17364620
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||| ||| |||| ||||||||||||||||||| ||||||||||||||||    
T  17364691 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 17364620  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 558
Target Start/End: Original strand, 19400733 - 19400816
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||  ||| |  |||||| |||| ||||||||||||||| ||||||||| |||| ||||||||| | ||||||||    
T  19400733 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttg 19400816  T

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Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 29188388 - 29188317
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  29188388 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 29188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 33359699 - 33359770
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  33359699 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 33359770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 50557862 - 50557911
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  50557862 tttaccattttgtcc-tataaggggcaatttggtaatctactaattggttg 50557911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 541
Target Start/End: Complemental strand, 41918992 - 41918924
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggt 541  Q
    ||||||||||||||||||| |  ||||||||||| ||| | ||||||||||||  || |||||||||||    
T  41918992 tctatatactaatataaaaatatatgtccattgaatttccaattttgcccctaggagtggcaatttggt 41918924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 10698206 - 10698135
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||| |||| ||||||   |||||||| | | |||||||||||||||||| |||||||| ||||||||    
T  10698206 atctatatgctaacataaaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaa 10698135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 558
Target Start/End: Complemental strand, 51971356 - 51971274
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||  ||| || |||||| ||||  ||||||||||| |||||||| ||| |||||||||||||| | ||||||||    
T  51971356 tatatactaataagaaaattcatgtcccttgaagttaccattttgtccctataa-gggtaatttggtaatctattaattggttg 51971274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 62061 - 62132
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  62061 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 62132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 12682843 - 12682772
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12682843 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 558
Target Start/End: Original strand, 13171627 - 13171710
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||  ||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13171627 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 13171710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 3757725 - 3757811
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3757725 atctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 3757811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 50120045 - 50119959
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50120045 atctatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 50119959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 478 - 543
Target Start/End: Original strand, 46104184 - 46104249
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  46104184 atactaatataaaagttaatgtccattgattttaccattttgccccaatgaggggcaatttggtaa 46104249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 8956932 - 8957000
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8956932 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 8986904 - 8986972
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8986904 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 37349802 - 37349870
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37349802 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 2116088 - 2116159
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||||||||||||    
T  2116088 atctatatactaatataaaagttaatgtccattgattttaccattttgtccttaggaggggcaatttggtaa 2116159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 35833488 - 35833429
Alignment:
Q  485 tataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaat 544  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35833488 tataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaat 35833429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 51347487 - 51347573
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51347487 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttg 51347573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 24948374 - 24948289
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||| ||||||||   ||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  24948374 atctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 558
Target Start/End: Complemental strand, 30529335 - 30529280
Alignment:
Q  503 ttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30529335 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 30529280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 3821286 - 3821200
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| |||| |||  |||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  3821286 atctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttg 3821200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 9888960 - 9888895
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattg 554  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9888960 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 39406319 - 39406234
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||| ||||||||   ||||| | |||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  39406319 atctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggtt 39406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 53991603 - 53991554
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53991603 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 557
Target Start/End: Original strand, 29712366 - 29712454
Alignment:
Q  470 acatctatatactaatat-aaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||| |||| ||||   ||||||| || | |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29712366 acatctatatacttatattaaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 29712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 36743291 - 36743203
Alignment:
Q  470 acatctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||||  |||   ||||||| || | |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  36743291 acatctatatactaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttg 36743203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 24547353 - 24547416
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  24547353 aatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttg 24547416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 20588561 - 20588647
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  20588561 atctatatactaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttg 20588647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 578656 - 578607
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  578656 tttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 508 - 553
Target Start/End: Complemental strand, 35716350 - 35716305
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttatt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35716350 tttaccattttgcccctataaggggcaatttggtaatctacttatt 35716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 50033697 - 50033764
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  50033697 aaagttaatgtcctatgaatttaccattttgcccttataaggg-caatttggtaatctacttattggtt 50033764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 17730463 - 17730518
Alignment:
Q  503 ttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  17730463 ttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttg 17730518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 5752471 - 5752521
Alignment:
Q  493 ttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  5752471 ttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 5752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 39716805 - 39716719
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| ||||||||||||||||  || ||||||||||    
T  39716805 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttg 39716719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 558
Target Start/End: Original strand, 15704115 - 15704196
Alignment:
Q  477 tatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||| ||||||||  |||||| | || | ||||||||||||||||||||||||| ||||||||||  |||| ||||||||    
T  15704115 tatacttatataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattactaattggttg 15704196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 35498619 - 35498534
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||||||   |||| || |||| |||| |||||||||||||||| || |||||||||||  |||| ||||||||    
T  35498619 tctatatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggttg 35498534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 557
Target Start/End: Original strand, 43021891 - 43021976
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||||  |||   ||||| | |||| |||||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  43021891 atctatatactaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggtt 43021976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 558
Target Start/End: Original strand, 16896008 - 16896070
Alignment:
Q  496 atgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||| |||| ||||| ||||||||| |||||||||| ||||||||||||| | ||||||||    
T  16896008 atgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttg 16896070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 47560305 - 47560251
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctata 527  Q
    |||||||||| |||| |||  |||||||| |||| ||||||||||||||||||||    
T  47560305 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 27881050 - 27881010
Alignment:
Q  154 catattcggtaaaggaagcttatgattcgataatggaggga 194  Q
    |||||||||||||||||||||||||| | ||||| ||||||    
T  27881050 catattcggtaaaggaagcttatgatgcaataattgaggga 27881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 52799047 - 52799095
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||| || | ||||||||||| ||||||| ||||||||||||||||    
T  52799047 aatgtcctttaaatttaccattttacccctattaggggcaatttggtaa 52799095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 558
Target Start/End: Complemental strand, 12422426 - 12422346
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12422426 atactaatataaaaattcatgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttg 12422346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Complemental strand, 6305520 - 6305452
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6305520 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 476 - 558
Target Start/End: Complemental strand, 42977913 - 42977834
Alignment:
Q  476 atatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||||||||  |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42977913 atatacttatataaaagaaaatgtccattg---ttaccattttgcccctataaggggcaatttggtaatctacttattggttg 42977834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Complemental strand, 43138617 - 43138549
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43138617 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 30754431 - 30754494
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30754431 aatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 30754494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 471 - 554
Target Start/End: Complemental strand, 36887057 - 36886974
Alignment:
Q  471 catctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattg 554  Q
    ||||||||||||||||  |||   ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36887057 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattg 36886974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 557
Target Start/End: Complemental strand, 12592558 - 12592471
Alignment:
Q  470 acatctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||| ||||||||   |||||||  ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  12592558 acatctatatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggtt 12592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 17643473 - 17643387
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  ||| | ||||||| |||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||    
T  17643473 atctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttg 17643387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 754515 - 754450
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattg 554  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  754515 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 473 - 543
Target Start/End: Complemental strand, 3088118 - 3088048
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||| |||| |||  |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3088118 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 3088048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 473 - 519
Target Start/End: Complemental strand, 34727422 - 34727376
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttg 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34727422 tctatatactaatataaaagttaatgtccattgattttaccattttg 34727376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 473 - 543
Target Start/End: Complemental strand, 33709900 - 33709830
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||| |||| ||| ||||||||| |||| ||||||||||| ||||||||| ||||||||||||||    
T  33709900 tctatatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaa 33709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 25698804 - 25698719
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| ||||||||||||||||  || ||||||||||    
T  25698804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttg 25698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 41689273 - 41689345
Alignment:
Q  471 catctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  41689273 catctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaa 41689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 30140501 - 30140587
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| | ||| ||||||||||  |||| ||||||||    
T  30140501 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttg 30140587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 543
Target Start/End: Original strand, 34715632 - 34715666
Alignment:
Q  509 ttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||| ||||||||||||||||    
T  34715632 ttaccattttgcccctattaggggcaatttggtaa 34715666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 471 - 543
Target Start/End: Complemental strand, 26777939 - 26777867
Alignment:
Q  471 catctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  26777939 catctatatactaatataaaagttaacgtccattgattttaccattttgcccctatgaggggcaatttggtaa 26777867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 4139435 - 4139364
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  4139435 atctatatactaatataaaagttaatgtccattgattttaccattttgtccctattaggggcaatttggtaa 4139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 8393562 - 8393633
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  8393562 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 19369006 - 19368943
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19369006 aatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 19368943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 11602252 - 11602166
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||  |||||||| | ||||||||    
T  11602252 atctatatactaatataaaaatccatgtccgttgattttaccattttgcccctataaggggcaattcagtaatctattaattggttg 11602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 29530649 - 29530563
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29530649 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttg 29530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 543
Target Start/End: Original strand, 53800504 - 53800569
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  53800504 atactaatataaaagttaatgtccattgattttaccattttgcccttaggaggggcaatttggtaa 53800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 11955577 - 11955528
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11955577 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 558
Target Start/End: Complemental strand, 28981902 - 28981819
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||  ||| |  |||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  28981902 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttg 28981819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 35855226 - 35855288
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35855226 aatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 35855288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 508 - 553
Target Start/End: Original strand, 22473679 - 22473724
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttatt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22473679 tttaccattttgcccctataaggggcaatttggtaatctacttatt 22473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 26102215 - 26102152
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  26102215 aatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttg 26102152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 8528191 - 8528105
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| ||||||||| || |||||||||||||||||||||||| || ||||||||||    
T  8528191 atctatatactaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggttg 8528105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 18682509 - 18682559
Alignment:
Q  493 ttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  18682509 ttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 18682559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 473 - 543
Target Start/End: Complemental strand, 19895732 - 19895662
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||| ||||| |||  |||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  19895732 tctatatacttatatagaagaaaatgtccattgaatttaccattttgcccttataaagggcaatttggtaa 19895662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 39838271 - 39838225
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccatttt 518  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  39838271 atctatatactaatataaaagttaatgtccgttgattttaccatttt 39838225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 22519211 - 22519259
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  22519211 aatgtccattgaatttaccattttgcccctataaggggcaatttagtaa 22519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 558
Target Start/End: Complemental strand, 40831990 - 40831928
Alignment:
Q  496 atgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||| |||| ||||||||||||| |||||||||| ||||| ||||||||||| ||||||||    
T  40831990 atgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttg 40831928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 543
Target Start/End: Original strand, 33872205 - 33872275
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||   |||||||  ||| |||||||||||| ||||| ||||| || ||||||||    
T  33872205 tctatatactaatataaaaagaaatgtccgatgaatttaccattttgtccctagaagggccattttggtaa 33872275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 544
Target Start/End: Complemental strand, 15321295 - 15321259
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaat 544  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  15321295 tttacaattttgcccctataaggggcaatttagtaat 15321259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 688062 - 688133
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  688062 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 4848347 - 4848418
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4848347 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 471 - 543
Target Start/End: Complemental strand, 49146212 - 49146139
Alignment:
Q  471 catctatatactaatataaaa-gttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49146212 catctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 49146139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 473 - 557
Target Start/End: Original strand, 29467751 - 29467835
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||| |||| |||   ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467751 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 489 - 557
Target Start/End: Complemental strand, 24684704 - 24684636
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24684704 aaagttaatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 3791514 - 3791563
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3791514 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 472 - 544
Target Start/End: Original strand, 46197415 - 46197488
Alignment:
Q  472 atctatatactaa-tataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaat 544  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||||    
T  46197415 atctatatactaaatataaaagttaatgtccattgattttaccattttgcccttaggagaggcaatttggtaat 46197488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 478 - 558
Target Start/End: Complemental strand, 29684195 - 29684115
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||||   ||||| | |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  29684195 atactaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttg 29684115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 473 - 557
Target Start/End: Original strand, 44804520 - 44804604
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||||  |||   ||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  44804520 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 44804604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 34872191 - 34872254
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34872191 aatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttg 34872254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 558
Target Start/End: Complemental strand, 35157052 - 35156997
Alignment:
Q  503 ttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35157052 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttg 35156997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 11840512 - 11840464
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11840512 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 11840464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 21601035 - 21600987
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21601035 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 21600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 470 - 543
Target Start/End: Original strand, 9143470 - 9143546
Alignment:
Q  470 acatctatatactaatataaaagt---taatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||     |||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  9143470 acatctatatactaatataaaaagaaataatatcccttgaatttaccattttgcccctataaggggcaatttggtaa 9143546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 39651235 - 39651150
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| ||||||||||||||||  |||| ||||||||    
T  39651235 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttg 39651150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 39276611 - 39276683
Alignment:
Q  471 catctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  39276611 catctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 39276683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 31900058 - 31900003
Alignment:
Q  487 taaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggta 542  Q
    |||||| |||||||| |||| ||||| ||||||||||||| |||||||||||||||    
T  31900058 taaaaggtaatgtcctttgaatttacaattttgcccctattaggggcaatttggta 31900003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 17169046 - 17169094
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  17169046 aatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 17169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 48530021 - 48529950
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| ||||  ||||||||||||||||||  |||||||||||||||    
T  48530021 atctatatacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaa 48529950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 42912138 - 42912208
Alignment:
Q  479 tactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    ||||| |||||||  | |||||||||||||||||| |||||||| ||  |||||||||||| |||| ||||    
T  42912138 tactagtataaaaagtgatgtccattgattttacctttttgcccttaagaggggcaatttgctaatttact 42912208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 544
Target Start/End: Original strand, 42684820 - 42684856
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaat 544  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  42684820 tttaccattttgcccctataaggggcattttagtaat 42684856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 544
Target Start/End: Complemental strand, 47175542 - 47175506
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaat 544  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  47175542 tttacaattttgcccctagaaggggcaatttggtaat 47175506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 4107953 - 4108024
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4107953 atctatatactaatataaaagttaatgtccattgattttaccatttttcccctatgaggggcaatttggtaa 4108024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 6969383 - 6969312
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  6969383 atctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 473 - 558
Target Start/End: Original strand, 25529241 - 25529326
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||||||||| |  |||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  25529241 tctatatactaatataaaaatccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaatctactaattggttg 25529326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 28573916 - 28573845
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||    
T  28573916 atctatatactgatataaaagttaatatcctttgattttaccattttgcccctaggaggggcaatttggtaa 28573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 4897559 - 4897497
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4897559 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 4897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 558
Target Start/End: Complemental strand, 9737841 - 9737754
Alignment:
Q  471 catctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||||||  |||   ||||||| |||| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  9737841 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttg 9737754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 34316957 - 34317027
Alignment:
Q  479 tactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    |||||||||||||  | |||||||||||||||||| |||||||||||  ||||||||||||||||| ||||    
T  34316957 tactaatataaaaagtgatgtccattgattttacctttttgcccctaagaggggcaatttggtaatttact 34317027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 543
Target Start/End: Complemental strand, 9981335 - 9981276
Alignment:
Q  484 atataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||  ||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  9981335 atataaaaggaaatgttcattgaatttaccattttacccctataaggggcaatttggtaa 9981276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 1218517 - 1218588
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  1218517 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 1218588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 15045634 - 15045563
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  15045634 atctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 15045563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 24443926 - 24443997
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||| ||| |||| ||||||||||||||||||| ||||||||||||||||    
T  24443926 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 24443997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 33328329 - 33328279
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||| |||| |||||||||||||||| |||||| ||||||||    
T  33328329 tttaccattttgctcctacaaggggcaatttggtagtctactaattggttg 33328279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 35133209 - 35133258
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||| |||||| |||||||||| ||||||||| ||||||||    
T  35133209 tttaccattttgcctctataa-gggcaatttgataatctactaattggttg 35133258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 32677271 - 32677186
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||| |||| ||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32677271 atctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 479 - 558
Target Start/End: Complemental strand, 19486192 - 19486113
Alignment:
Q  479 tactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||| |||||||||  ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19486192 tacttatataaaagaaaatatccattgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttg 19486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 19486211 - 19486274
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19486211 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 19486274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 17836989 - 17837051
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17836989 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 9920961 - 9920912
Alignment:
Q  508 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9920961 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 10876657 - 10876573
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  10876657 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgccccta--aggggcaatttggtaatctacttattggttg 10876573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 28607220 - 28607291
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| ||| | |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  28607220 atctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaa 28607291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 10050279 - 10050191
Alignment:
Q  470 acatctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| |||||||||||| |||  |||| ||||||||    
T  10050279 acatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttg 10050191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 42781033 - 42781096
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||| ||||||| |||| |||||||||||||||||||||| ||||||||||    
T  42781033 aatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggttg 42781096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 543
Target Start/End: Complemental strand, 9545861 - 9545792
Alignment:
Q  474 ctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  9545861 ctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 9545792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 2952779 - 2952827
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  2952779 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 2952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 540
Target Start/End: Original strand, 18096495 - 18096558
Alignment:
Q  477 tatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttgg 540  Q
    |||||| ||||||||   ||||||| |||| ||||||||||||||||||||||||| |||||||    
T  18096495 tatacttatataaaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 24520865 - 24520951
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||| ||||||||   ||||||| |||| ||||  |||||||| |||||||| ||||||||||||  |||| ||||||||    
T  24520865 atctatatacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttg 24520951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 543
Target Start/End: Complemental strand, 4292869 - 4292799
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||| |||| |||   ||||||| |||| ||||||||||||| ||||| | ||||||||||||||    
T  4292869 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaa 4292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 544
Target Start/End: Original strand, 5250354 - 5250394
Alignment:
Q  504 tgattttaccattttgcccctataaggggcaatttggtaat 544  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  5250354 tgattttaccattttgcccctaaaaggggcatttttgtaat 5250394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 5979 - 5908
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  5979 atctatatactaatataaaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 558
Target Start/End: Original strand, 36776402 - 36776489
Alignment:
Q  471 catctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||||||  |||   ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36776402 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttg 36776489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 40587757 - 40587695
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40587757 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 8760717 - 8760785
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8760717 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 557
Target Start/End: Complemental strand, 25836336 - 25836268
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25836336 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 482 - 558
Target Start/End: Original strand, 41972965 - 41973041
Alignment:
Q  482 taatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41972965 taatataaaattaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttg 41973041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 4466508 - 4466437
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||||    
T  4466508 atctatatactaatataaaagttaatgtccattgattttaccattttacccttaggaggggcaatttggtaa 4466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 25346056 - 25346119
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25346056 aatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttg 25346119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 24053913 - 24053999
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||  |||   ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24053913 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttg 24053999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 543
Target Start/End: Original strand, 7389203 - 7389268
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  7389203 atactaatataaaagttaatgtccattgattttaccattttgccccaaggaggggcaatttggtaa 7389268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 543
Target Start/End: Complemental strand, 25616580 - 25616515
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  25616580 atactaatataaaagttaatgtccattgattttaccattttgcccttaagaggggcaatttggtaa 25616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 1942805 - 1942873
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1942805 aaagttaatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 473 - 543
Target Start/End: Complemental strand, 25620801 - 25620731
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    |||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  25620801 tctatacactgatataaaagttcatgtccattgattttactattttgcccctatgaggggcaatttggtaa 25620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 8162846 - 8162781
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattg 554  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  8162846 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 32844165 - 32844233
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||||||||  | | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32844165 aaagttaatgtcccataaatttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 475 - 558
Target Start/End: Complemental strand, 40616179 - 40616096
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||||||||  ||| |  |||||| |||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  40616179 tatatactaataagaaaatccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttg 40616096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 549
Target Start/End: Original strand, 19243234 - 19243311
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    ||||||||||||||||||||  | |||||  ||||||||||| |||||||||| | ||||||||||||||||| ||||    
T  19243234 atctatatactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttact 19243311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 549
Target Start/End: Original strand, 19316418 - 19316495
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    ||||||||||||||||||||  | |||||  ||||||||||| |||||||||| | ||||||||||||||||| ||||    
T  19316418 atctatatactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttact 19316495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 9472174 - 9472236
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| ||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  9472174 aatgtcccttgaaattaccattttgcctctataaggg-caatttggtaatctacttattggttg 9472236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 42245781 - 42245734
Alignment:
Q  511 accattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  42245781 accattttgcccctataaggggtaatttgataatctacttattggttg 42245734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 503 - 549
Target Start/End: Original strand, 45435020 - 45435066
Alignment:
Q  503 ttgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  45435020 ttgaatttaccattttgcccttataaggggcaatttggtaatctact 45435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 549
Target Start/End: Complemental strand, 45298334 - 45298263
Alignment:
Q  478 atactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    ||||||||||||||  | |||| ||||||||||||| |||| ||||||  ||||||||||||||||| ||||    
T  45298334 atactaatataaaaaatgatgtacattgattttacctttttacccctaagaggggcaatttggtaatttact 45298263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 558
Target Start/End: Complemental strand, 44389069 - 44389007
Alignment:
Q  496 atgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||| |||| ||||||||||| ||| ||||||||| |||||||||||||| | ||||||||    
T  44389069 atgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttg 44389007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 18378889 - 18378804
Alignment:
Q  473 tctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    |||||||||| |||| |||   ||||||| |||| |||| ||||||||| |||| ||||||||||||||||  || ||||||||||    
T  18378889 tctatatacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttg 18378804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 8365 - 8303
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8365 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

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Target: scaffold0381 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 554
Target Start/End: Original strand, 9585 - 9650
Alignment:
Q  489 aaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattg 554  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9585 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

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Target: scaffold0009 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 472 - 557
Target Start/End: Original strand, 225434 - 225519
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 557  Q
    ||||||||||| |||| |||   |||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  225434 atctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

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Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 108569 - 108632
Alignment:
Q  495 aatgtccattgattttaccattttgcccctataaggggcaatttggtaatctacttattggttg 558  Q
    ||||||| |||| |||||||||||| ||| |||||||| ||||||||||||||| |||||||||    
T  108569 aatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggttg 108632  T

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Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 543
Target Start/End: Complemental strand, 20667 - 20596
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaa 543  Q
    ||||||||||| |||| |||   ||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  20667 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

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Target: scaffold0429 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 549
Target Start/End: Original strand, 12960 - 13036
Alignment:
Q  472 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctataaggggcaatttggtaatctact 549  Q
    ||||||||||||||||| ||  | ||||| |||||||||||| |||||||||||  ||||||||||||||||| ||||    
T  12960 atctatatactaatatagaaagtgatgtcaattgattttacc-ttttgcccctaagaggggcaatttggtaatttact 13036  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 553
Target Start/End: Complemental strand, 18953 - 18873
Alignment:
Q  475 tatatactaatataaaagttaatgtccattgattttaccattttgcccctataa--ggggcaatttggtaatctacttatt 553  Q
    ||||||||| ||||||| |  |||||||||||||||| |||||||||||||  |  |||| | ||||||||||||||||||    
T  18953 tatatactattataaaaatacatgtccattgattttatcattttgcccctaggaggggggtattttggtaatctacttatt 18873  T

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