View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_low_9 (Length: 577)
Name: NF2504_low_9
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 559
Target Start/End: Original strand, 49726560 - 49727109
Alignment:
| Q |
10 |
catcatcaattacctgtggatttctcggagaaattgaattcccttttacaagcacacaacatccagattgtggcatgttagtaatacatggttgtgaaga |
109 |
Q |
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| T |
49726560 |
catcttcaattacctgtggatttctcggagaaattgaattcccttttacaagcacacaacatccagattgtggcatgttagtaatacatggttgtgaaga |
49726659 |
T |
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| Q |
110 |
ctatgaaccacaatccnnnnnnnnnnnnnnnnnnnnnnnnngatggttcgatattctgaaaatcgaaccattcacaatcacaatcaaagacgaccaactc |
209 |
Q |
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| T |
49726660 |
ctatgaaccacaatccaaaaaaacaatacaaaacaacaaaagatggttcgatattctgaaaatcgaaccattcacaatcacaatcaaagacgaccaactc |
49726759 |
T |
|
| Q |
210 |
cacgatattttgctacaaaaaagctgtgatattctaacatatgattccatgttcacggtcaatacacctttggtttcatctcgtttggaatattacgtaa |
309 |
Q |
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| T |
49726760 |
cacgatcttttgctacaaaaaagctgtgatattctaacatatgattcaatgttcatggtcaacacacctttggtttcatctcgtttggaatattacgtaa |
49726859 |
T |
|
| Q |
310 |
ctgttttcggatgcaacagcaacaactcactcgatcttcaacaatactattctgtttctaattctagctccatttgtagagaagatactactactttgta |
409 |
Q |
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| T |
49726860 |
ctgttttcggatgcaacagcaacaactcactcgatcttcaacaatactattctgtttctaattctagctccatttgtagagaagatactactactttgta |
49726959 |
T |
|
| Q |
410 |
tggtgtttcggattcggatataaagagtaataaaactattgtggttgtaactgattctgtttccaattctaatcatcttaaaggttgttcaaatgttgag |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49726960 |
tggtgtttcggattcggatataaagagtaataaaactattgtggttgtaactgattctgtttccaattctaatcatcttaaaggttgttcaaatgttgag |
49727059 |
T |
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| Q |
510 |
cttccaacgtattcaaaggttaaccgtcttgaacctgctgatctttttaa |
559 |
Q |
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| T |
49727060 |
cttccaacgtattcaaaggttgaccgtcttgaacctgctgatctttttaa |
49727109 |
T |
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