View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_high_12 (Length: 305)
Name: NF2505_high_12
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 681643 - 681394
Alignment:
| Q |
18 |
accttatg-caatacctagttctggtaccttttcattatttgataattttatagttagcgtgataatcatttatatttaatttttcaataaaacaaaaac |
116 |
Q |
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| T |
681643 |
accttatgtcaatacctagttctggtaccttttcattatttgataattttatagttagcgtgataatcatttatatttaatttttcaataaaacaaaaac |
681544 |
T |
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| Q |
117 |
agacatcactgcgtatagnnnnnnnnnnctt--cttgtatataatggttccttaagaaacattctactataaacatatctatcatattcaaccaacaaaa |
214 |
Q |
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| T |
681543 |
agacatcactgcgtatagtatttttttctttttcttgtatataatggttccttaagaaacattctactataaacatatctatcatattcaaccaacaaaa |
681444 |
T |
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| Q |
215 |
aataagtatggccacttaagctttaggtaaatataaaatgcaatttagtc |
264 |
Q |
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| T |
681443 |
aataagtatggccacttaagctttaggtaaatataaaatgcaatttagtc |
681394 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 21010906 - 21010953
Alignment:
| Q |
258 |
tttagtcttataaacattatgaatgaatagttggtccacaaattacaa |
305 |
Q |
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| T |
21010906 |
tttagtcttataaacattttggatgaatagttggtcctcaaattacaa |
21010953 |
T |
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