View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_high_16 (Length: 253)
Name: NF2505_high_16
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45113058 - 45113298
Alignment:
| Q |
1 |
cgaatttaatgtatttccttttcgacagacagacaaggcctctatagttcaaggcgctatcaattacatggaaaaacttcaaaaacgagtgatggagtta |
100 |
Q |
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| T |
45113058 |
cgaatttaatgtatttccttttcgacagacagacaaggcctctatagttcaaggcgctatcaattacgtggaaaaacttcaaaaacgagtgatggagtta |
45113157 |
T |
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| Q |
101 |
gaagtacaacaaagcaagagaggcaaagaaccaataatacttctcaatgaggaaaattcttgtgaaatgaatcttgacaattatcttagaccaataaatg |
200 |
Q |
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| T |
45113158 |
gaagtacaacaaaacaagagaggcaaagaaccaataatacttctcaataaggaaaattcttgtgaaatgaatcttgacaattatcttagaccaataaata |
45113257 |
T |
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| Q |
201 |
attttcttcctgatgtcaaagtgaaagtgttggagaataat |
241 |
Q |
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| T |
45113258 |
attttcttcctgatgtcaaagtgaaagtgttggagaataat |
45113298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 45124401 - 45124578
Alignment:
| Q |
61 |
caattacatggaaaaacttcaaaaacgagtgatggagttagaagtacaacaaagcaagagaggcaaagaaccaataatacttctcaatgaggaaaattct |
160 |
Q |
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| T |
45124401 |
caattacgtggagcaactccagaaacgagtgaaggagttagaagcacaacaaaacaagagaggcaaagaaccaatgatacttttcaataaggaaaattct |
45124500 |
T |
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| Q |
161 |
tgtgaaatgaatcttgacaattatcttagaccaataaatgattttcttcctgatgtcaaagtgaaagtgttggagaataat |
241 |
Q |
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| T |
45124501 |
tgtgaaatgaatcttgacaattgttttagacc---aaatgaattgcttccagatgtcaaagtgaaagtgtcggagaataat |
45124578 |
T |
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