View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2505_high_17 (Length: 252)
Name: NF2505_high_17
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31524720 - 31524949
Alignment:
| Q |
1 |
cttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524720 |
cttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaaccatacgcttccaaccccctccaattttgatgtggcgatgtggccgt |
31524819 |
T |
|
| Q |
101 |
ttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31524820 |
ttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagaggcagtcttcttccccaatgtcaaagcacaaaatgattcat |
31524919 |
T |
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| Q |
201 |
agagtaacacctgcagaatcaaacagatag |
230 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
31524920 |
agagtaacaactgcagaatcaaacagatag |
31524949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 26627855 - 26627891
Alignment:
| Q |
112 |
agtgatacaattccacttgtttccacactcatcaatc |
148 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
26627855 |
agtgatacaattccacttgtttccacattcatcaatc |
26627891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33366781 - 33366552
Alignment:
| Q |
1 |
cttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
33366781 |
cttggagcaccgatcttcgttacttacacctattggtatgttacgtgcttcaaccatacgcttccaaccccctccaattttgatgcggcgatgtggccgt |
33366682 |
T |
|
| Q |
101 |
ttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33366681 |
ttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagaggcagtcttcttccccaatgtcaaagcacaaaatgattcat |
33366582 |
T |
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| Q |
201 |
agagtaacacctgcagaatcaaacagatag |
230 |
Q |
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||||||||| || ||||||||||||||||| |
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| T |
33366581 |
agagtaacaactacagaatcaaacagatag |
33366552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49194677 - 49194906
Alignment:
| Q |
1 |
cttggagcaccgatcttcgttacttacacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgt |
100 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
49194677 |
cttggagcaccgaacttcgttacttacacctattggtatgttacgtgcttcaaacatacgcttccaaccccctccaattttgatgaggcgatgtggccgt |
49194776 |
T |
|
| Q |
101 |
ttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49194777 |
ttcccgaacacagtgatacaattccacttgtttccacactcatcaatcaacaccacagaggcagtcttcttccccaatgtcaaagcacaaaatgattcat |
49194876 |
T |
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| Q |
201 |
agagtaacacctgcagaatcaaacagatag |
230 |
Q |
| |
|
||||||||| || ||||||||||||||||| |
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| T |
49194877 |
agagtaacaactacagaatcaaacagatag |
49194906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 39334573 - 39334610
Alignment:
| Q |
112 |
agtgatacaattccacttgtttccacactcatcaatca |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
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| T |
39334573 |
agtgatacaattccacttgtttccacagtcatcaatca |
39334610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 41437162 - 41436962
Alignment:
| Q |
27 |
cacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattcca |
126 |
Q |
| |
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||||||||| |||||||| ||||||| |||| ||||||||||||| ||||||| ||||||||||||| | |||| | ||| | ||||||||| ||||| |
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| T |
41437162 |
cacctattgaaatgttgcgcgcttcaagcatacgcttccaacccccgtcaattttaatgtggcgatgtgtctgtttactgaatatagtgatacagttcca |
41437063 |
T |
|
| Q |
127 |
cttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacag |
226 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||| ||||| |||||| |||||||||| |||| |||||| ||||||||||||||| |
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| T |
41437062 |
tttgtttccacagtcatcaatcaacacaacggaggtagtcttcttgcccaaagtcaaatgacaaaatgatccatatggtaacatatgcagaatcaaacag |
41436963 |
T |
|
| Q |
227 |
a |
227 |
Q |
| |
|
| |
|
|
| T |
41436962 |
a |
41436962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 42934027 - 42934227
Alignment:
| Q |
27 |
cacctattggtatgttgcgtgcttcaaccatatgcttccaaccccctccaattttgatgtggcgatgtggccgtttcccgaacacagtgatacaattcca |
126 |
Q |
| |
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|||||||||| |||||| | ||||||| |||| ||||||||||||| |||||||| ||||||||||||| | |||| | ||| | ||||||||| ||||| |
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| T |
42934027 |
cacctattggaatgttgagcgcttcaagcatacgcttccaacccccaccaattttaatgtggcgatgtgtctgtttactgaatatagtgatacagttcca |
42934126 |
T |
|
| Q |
127 |
cttgtttccacactcatcaatcaacaccacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacag |
226 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| |||||||| ||||| |||||| |||||||||| |||| |||||| |||| |||||||||| |
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|
| T |
42934127 |
tttgtttccacagtcatcaatcaacacaacggaggtggtcttcttgcccaaagtcaaatgacaaaatgatccatatggtaacatatgcataatcaaacag |
42934226 |
T |
|
| Q |
227 |
a |
227 |
Q |
| |
|
| |
|
|
| T |
42934227 |
a |
42934227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 28503430 - 28503467
Alignment:
| Q |
112 |
agtgatacaattccacttgtttccacactcatcaatca |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28503430 |
agtgatacaattccacttgtttccacagtcatcaatca |
28503467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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