View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2505_high_23 (Length: 242)
Name: NF2505_high_23
Description: NF2505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2505_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 13590891 - 13591027
Alignment:
| Q |
90 |
attgtttgtacatcataacaaataataacaaattatgagtttgttacacataacaacccttaattttctcaagt-tttgcccatatataaggaattactt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13590891 |
attgtttgtacatcataacaaataataacaaattatgagtttgttacacataacaacccttaattttctcaagtctttgcccatatataaggaattactt |
13590990 |
T |
|
| Q |
189 |
agggcttaggaactcataactcatctcaatcataaaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13590991 |
agggcttaggaactcataactcatctcaatcataaaa |
13591027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 30969818 - 30969773
Alignment:
| Q |
114 |
ataacaaattatgagtttgttacacataacaacccttaattttctca |
160 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
30969818 |
ataacaaatcatgagtttgttaca-ataacaacccttgattttctca |
30969773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 23499438 - 23499483
Alignment:
| Q |
114 |
ataacaaattatgagtttgttacacataacaacccttaattttctca |
160 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
23499438 |
ataacaaatcatgagtttgttaaa-ataacaacccttaattttctca |
23499483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University